BAC Information

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BAC

Clone NameMSMg01-157K21
Chromosome14 (Build37)
Map Location 98,606,271 - 98,606,566
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668659, Dach1
Downstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157K21.T7 (MSMg01no157_k21.b1)MSMg01-157K21.TJ (MSMg01no157_k21.g1)
ACCAG358094AG358095
length742744
length of high quality
(start - end)
657 (34 - 690)297 (64 - 360)
definitionCHROMAT_FILE: MSMg01no157_k21.b1 PHD_FILE: MSMg01no157_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:04 2005CHROMAT_FILE: MSMg01no157_k21.g1 PHD_FILE: MSMg01no157_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCACTA
AAACCATTTGACCCTGGATGCTGTTGTTAGAAGACTTAATTACTGCTTGT
ATTTCTCTAGGTTTTTTAGGTCTGTTAAATTCAACATTAGATCTTGATTT
AAATTTGTTAAGTGGTATGCACTGAAAAAAGTATTTATTCCTTTAGGTTC
TCCATTGTAATGGAGTACAGGTTTTTAAAGTATGTCCTTATGATTCGTTG
GATTTCATCAGCATTTGTTATTATGTCTCCTTTTTCAACTGTAATTTTCT
TAATTTGGACAATCTCTTTCAGCCTTTTGGTTAATTTGAATAATGGTTTG
TCAGTCTTATTGATTTTCTCAAAGAGCTGTTTCACTAATTTATTTTTTAC
GTTTTTTTTTTCTTAATTTTTTGTGTATTTCTACGATAGTTGTTTCAACC
TCAAGTTTTATTTATTTCTTGATGTCTACTCTTTTGTGTGAAATTTCTTC
TTTTTGTTCTAGAGTTACGCTTCATTTATCCTATTAAGTTCCTAGTATGA
GATATTTTCAGTTATTTTATGTAGACACTTAGTCCAATGAACTTGTCTCT
TAGAACTGCTATTATTTGTCCCAGGTTTGTGCAAATTGTGTATTTATTTT
CATTTAATTCTTTTTTAAATTTCTTTAATTTCATACTTTATGTCTTGACC
CATTTTTAATTCAGTGGTGAGTTGTTCAGTTCCCATGAGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAGACTTAATACAAATATCTAGAACACGAAAGAAAGA
CAAAAACAGTGGCAAACTATAAAGCCACAAGAGAAATAGTATCTTGACAA
ATGAAAAGGTTTTGTTAACAAAAATAGGTCTCAACATAAATGGAGTTACA
AAACTACAGAAATATGAAAATCTATACAGATGGACAGACCTGAAGTACAC
TATGCTTGGGTGGTCACATTGGTGAGATGTGAAGGTCATAGAGTCTTATG
TTACCAAGAAACATAGTTTCACAGCAAAGTCCCTGTTCCTCTGGCTCTTA
GAATCCTCCTTCACACACTGCCCCAGCGTCAAATGAGTTTTAGGTGCAGG
ATTGTTTTGTAGATGTATCCAATGGATTGAACTTCACAACTCTCCATTCT
GATTGACTGTGGTTTTATGTAATGGAGGTCATCTGTTTCTAAGAGAGATT
CGCCTAATGAGGGGCGAACATTACATGTATGTGTATGTATAAGGACAAAT
AAACAAGGAAGACATCAATCAACATGTCAAACTGGACAAGGAAAAAGCCC
ATGAGGCCTCAATTCTAACCAAAGAAGACAGACAACTGAGTGAAACTAAG
AGCCGGAGAAGTGGTCCTTCCCCACTCATGAGCACACTAATTGGTTGTCC
ACTGCTAAATGGTTAGCTCTAGAAACATACATATAAGCAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_k21.g1 MSMg01no157_k21.g1 CHROMAT_FILE:
MSMg01no157_k21.g1 PHD_FILE: MSMg01no157_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:04 2005
         (297 letters)



>mm_chr14_98606071_98606767
          Length = 697

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagacttaatacaaatatctagaacacgaaagaaagacaaaaacagtggcaaactataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagacttaatacaaatatctagaacacgaaagaaagacaaaaacagtggcaaactataaa 260

                                                                       
Query: 61  gccacaagagaaatagtatcttgacaaatgaaaaggttttgttaacaaaaataggtctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccacaagagaaatagtatcttgacaaatgaaaaggttttgttaacaaaaataggtctca 320

                                                                       
Query: 121 acataaatggagttacaaaactacagaaatatgaaaatctatacagatggacagacctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataaatggagttacaaaactacagaaatatgaaaatctatacagatggacagacctga 380

                                                                       
Query: 181 agtacactatgcttgggtggtcacattggtgagatgtgaaggtcatagagtcttatgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtacactatgcttgggtggtcacattggtgagatgtgaaggtcatagagtcttatgtta 440

                                                                   
Query: 241 ccaagaaacatagtttcacagcaaagtccctgttcctctggctcttagaatcctcc 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaagaaacatagtttcacagcaaagtccctgttcctctggctcttagaatcctcc 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)