BAC Information

Click to search

BAC

Clone NameMSMg01-158B16
Chromosome14 (Build37)
Map Location 66,975,588 - 66,975,892
singlet/doubletsinglet
Overlap geneStmn4
Upstream geneZfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158B16.T7 (MSMg01no158_b16.b1)MSMg01-158B16.TJ (MSMg01no158_b16.g1)
ACCAG358409AG358410
length732730
length of high quality
(start - end)
309 (45 - 353)281 (76 - 356)
definitionCHROMAT_FILE: MSMg01no158_b16.b1 PHD_FILE: MSMg01no158_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:35 2005CHROMAT_FILE: MSMg01no158_b16.g1 PHD_FILE: MSMg01no158_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTCTATGCCCAGCGCTCGGGAGGTGCTCTCTAAATATCCTTCC
CACTCCCATTGGGATGGGACAAAGAGATATGGGGCTGCACGTCCTGCTCA
CGATGAGACGGGAGAAAGAGACATGCAGCTGCTAACCTTCCTTCGCTCCT
CTGCTGCTTCTAGCTTCTTCTGGATCTCTTCTAATGATGGGTCTCGCCGT
CTTGGGAGGGAGGCATTAAACTCAGGCACCCCGTCAAAGGAAGGTGGCTT
CAAGATGACTTCAAAGTACTGGCCCGAGGTGCACTTGTTCAGCTCGATGA
CTTCTTTATCACACACCCCCCCCCAGTTCAGGTCTACTGTATCTGCTGTG
GAGGGCACACCCCCCCCTGATCACCTTCTGAGGAGCAGCTGGGGCCCCAA
CAAGCATGCGAACATGCACACAGACACAGGGAAGCTGGGAGTCCCAAGGC
ACACCAATGACTAGGGGGCTGGTTGATCCTGAATATTGGATCCTAAGGTC
AGTGACTTTGACAGAATAAGGTTTGAGGATTCCCTAGGCTAGGATTCTAG
GAGCTGTGACTTGTGATAATAGTCACTGCCCCCCCACCTGCCGCCGCTCC
TTGCTGATGACTAACCATCCGTTCTTTTATATCCCCCTCATCCCAGGCCC
CTTCTTGGCCTGTGTCCTTTTGATGGACCTGG
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATCCTCAGCATCCACATAAAAACA
CCACACACACACGCACGCACACACGCATGCACGCACACACACACACACTT
TAAAATTCTAGTGCAGGGAAGACAGAGACAGGAAGGTCCTGAGGCTCACA
GCTTAGCTTAGTCAGCGAACTTCAATGGGAGACCCTGCCTCAGACAATCA
AAGTGGATAGTTCCTGTAGAGTGCCATCTATGGTTCACCTCTGGCTTCTA
CGTGTGTGTTTACATGTGAGTACACACAGCTGCACACATGTGCACAGAAA
CCAATTTTTTTTTCTCCCCCCCCCGCCCCCCTAAACATCAGAATCCCTTT
ACTCTCTACTTGCCACCCCACGAAAGAAATTTAGCTGGGGTTTCTTTCTT
TTCTCCTTCCCTCTTTCCACTCTTTTCCCTCATCTTCTCTTCCTCCCCGT
TCCCTACCCTCTCTGACTCTGTCCTCCTTTCCTCCACTTTTCTGAATCTC
TGGAGCTATGCCAGAGGTTGATTAAATGAAAACAAGAAGACAAGAAAAGA
GGATTTCTATCCAAAAGAGATCCATAATCCAAAAGAAAGAATTTAGCACC
TGCTTGTGTGTGTGTGTGTGTCCATCCCCCCTCCTTCTTTTAATAGTCCC
ACCTCCACTCTCCTCTGTTTCCGCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_b16.b1 MSMg01no158_b16.b1 CHROMAT_FILE:
MSMg01no158_b16.b1 PHD_FILE: MSMg01no158_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:35 2005
         (309 letters)



>mm_chr14_66975384_66976092
          Length = 709

 Score =  559 bits (289), Expect = e-164
 Identities = 301/305 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggtctatgcccagcgctcgggaggtgctctctaaatatccttcccactccca 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaattcctggtctatgcccagggctcgggaggtgctctctaaatatccttcccactccca 450

                                                                       
Query: 65  ttgggatgggacaaagagatatggggctgcacgtcctgctcacgatgagacgggagaaag 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttgggatgggacaaagagttatggggctgcacgtcctgctcacgatgagacgggagaaag 390

                                                                       
Query: 125 agacatgcagctgctaaccttccttcgctcctctgctgcttctagcttcttctggatctc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 389 agacatgcagctgctaaccttccttcgctcctctgctgcttctagcttcttctgaatctc 330

                                                                       
Query: 185 ttctaatgatgggtctcgccgtcttgggagggaggcattaaactcaggcaccccgtcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttctaatgatgggtctcgccgtcttgggagggaggcattaaactcaggcaccccgtcaaa 270

                                                                       
Query: 245 ggaaggtggcttcaagatgacttcaaagtactggcccgaggtgcacttgttcagctcgat 304
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 269 ggaaggtggcttcaagatgacttcaaaggactggcccgaggtgcacttgttcagctcgat 210

                
Query: 305 gactt 309
           |||||
Sbjct: 209 gactt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)