BAC Information

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BAC

Clone NameMSMg01-158P03
Chromosome14 (Build37)
Map Location 94,174,893 - 94,175,338
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158P03.T7 (MSMg01no158_p03.b1)MSMg01-158P03.TJ (MSMg01no158_p03.g1)
ACCAG359016AG359017
length780735
length of high quality
(start - end)
86 (105 - 190)606 (76 - 681)
definitionCHROMAT_FILE: MSMg01no158_p03.b1 PHD_FILE: MSMg01no158_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:34 2005CHROMAT_FILE: MSMg01no158_p03.g1 PHD_FILE: MSMg01no158_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCCGGAATTCAGGCTATGGATAGAATTCAGTTGGAGTTCAATTCACA
GCAGTAAGGTTTGAGCAGAGCAGTTAAGTCAGAAGCCAAGAGGAGCCAGT
TTGAACCATTCAAGAGAAGGAGAAGGTTTTTGAGCCAGAACACGATAAAT
TGAATCAGCCCAGCCTGAGTTCAGAAAGAACTAGACCAGGTGAGATTATT
CAGTATTCTGCCTACAACAATTACATCTGGCCAGTGCAAGACCCTTTTAC
CATTTGATCATCTGTTCCCAGCTGCTAGACCTGCTTGGAAGGTCATGCAA
TACCTGGCAGTTACAGCTTTCTTTTTTTTTGCCCCCCACCCCCCCCTGCG
CTTCGCGTATTTCCACAGTTCCTTAACTCCCCCCACCCCCCCATAATTCC
CTGGTGAGGTGTACCCCCGACTCCCTTCCCCCTCTACCCCTATTGCCCCT
CCCACCTTACCCTCCTTTTCCCCCCTTTCCCCTTGTCCCCCTTCTCCTTT
TTTCCCTTTTTTCCCCTCCCTCCTCCTCCCTCCCCCCTCCGCTTCCCTTC
TCCCCCCTCTTCTCCCTCCCCCCCCCCTTATTCCTTCACCCCCCTTCCCC
CCCTTCCTCCCCTCCCCTCTTCCCCCTCTCCCCTCTCCGCCCCCTTTTTC
TCCCCCCCTTTCTTCCCCCCCCTCCCCCCGTATTCTCCCATCCCCCTTCT
TCCTTCCCCCCTTATTCTCACCCCCTCTCN
CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATGAACTATATATCCAGAGTAGGG
TGATAATTCTCTTACTTGCCTAAAATTAATGACTTTATAATTAATACATG
ACAATGGATTCATGAGATGTATAACTGGTGCAAAAATCTGGAAATTATAT
GAAATTTAACATTTTGGCAAACATCACATTTGGTCTTATAATCACTGACC
TAATTGAAGGAGGGCAAAATTCAATTGGCATGTTAATTTTCTATGGTTTC
TTTACTTTTATAAACATGGTTTTTATTAAAATGATGATTATAGATTTTCC
TCCAAGATCTCTGAATTTACTAGCACTGAGTAGGTTAAAATAATTTCATA
TGAGATAATCAAAGCTACCTGAAGTGTGAGTGAACTACAAATGTAACCAG
ACTTACCTGAAAAACACACACACACACACACACTTGATGGTATGTTGGTG
ATTAAGTACCTATTTCTTTAAGGATCAGTTATGGATGGTTTCCATACATA
GCTTTAGAAAAGTGGGTTGAGACCCCTTCGGGGATGAGCAACATTTTCAA
ACATGTGGCTTAGATCATTGGAATGCATAAAGATATTTAACTTACAACTT
CAAACAGTAGCAAAATCAGAGTTATGGCGTACCCTGTGGGGTCACCACAA
CACAAGGGACTATATTAAAGTGTCTCGGCATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_p03.g1 MSMg01no158_p03.g1 CHROMAT_FILE:
MSMg01no158_p03.g1 PHD_FILE: MSMg01no158_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:34 2005
         (606 letters)



>mm_chr14_94174893_94175898
          Length = 1006

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaactatatatccagagtagggtgataattctcttacttgcctaaaattaatgactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 catgaactatatatccagagtagggtgataattctcttacttgcctaaaattaatgactt 387

                                                                       
Query: 61  tataattaatacatgacaatggattcatgagatgtataactggtgcaaaaatctggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tataattaatacatgacaatggattcatgagatgtataactggtgcaaaaatctggaaat 327

                                                                       
Query: 121 tatatgaaatttaacattttggcaaacatcacatttggtcttataatcactgacctaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatatgaaatttaacattttggcaaacatcacatttggtcttataatcactgacctaatt 267

                                                                       
Query: 181 gaaggagggcaaaattcaattggcatgttaattttctatggtttctttacttttataaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaggagggcaaaattcaattggcatgttaattttctatggtttctttacttttataaac 207

                                                                       
Query: 241 atggtttttattaaaatgatgattatagattttcctccaagatctctgaatttactagca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 atggtttttattaaaatgatgattatagattttcctccaagatctctgaatttactagca 147

                                                                       
Query: 301 ctgagtaggttaaaataatttcatatgagataatcaaagctacctgaagtgtgagtgaac 360
           ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 146 ctgggtaggttaaaataatttcatatgagataatcaaagctacgtgaagtgtgagtgaac 87

                                                                       
Query: 361 tacaaatgtaaccagacttacctgaaaaacacacacacacacacacacttgatggtatgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86  tacaaatgtaaccagacttacctgaaaaacacacacacacacacacacttgatggtatgt 27

                                     
Query: 421 tggtgattaagtacctatttctttaa 446
           ||||||||||||||||||||||||||
Sbjct: 26  tggtgattaagtacctatttctttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)