BAC Information

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BAC

Clone NameMSMg01-160J12
Chromosome14 (Build37)
Map Location 104,559,740 - 104,560,044
singlet/doubletsinglet
Overlap genenone
Upstream genePhr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420, Rbm26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160J12.T7 (MSMg01no160_j12.b1)MSMg01-160J12.TJ (MSMg01no160_j12.g1)
ACCAG360224AG360225
length726842
length of high quality
(start - end)
311 (52 - 362)144 (74 - 217)
definitionCHROMAT_FILE: MSMg01no160_j12.b1 PHD_FILE: MSMg01no160_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:36 2005CHROMAT_FILE: MSMg01no160_j12.g1 PHD_FILE: MSMg01no160_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNATTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTTTTATGGTTCTCTTCCTACACAATTTTGTTTAAAAG
ATTAAAAAAAAAAACCAGAATGTGGCTATCTTGAAGCTTTCTTGGTAGTT
GCTGGAGACGTTAGGTATATCTAAAAATTATTGCTTCAGATATAACCTAC
ACAAGTTTCCAATTCAGGATGCTGCACAGCAAATCTGAATGAAATAAGAG
CAGACATCACTTATTAAATAAGCTTATGGGAGCTTGAAGGTGCTGGCTGG
CTCATGGAGTTTGGGAGCATACTACCAGGCTTGCACAAACATGTCTTGGA
AAGAGGCAGTTGTTTTGAACACCCCCCACCGTTCCATGTATGGAAGACCA
GGGCAAAGACTTTCTCACCCCCACAGACCTTCTAAGCTCCACAAAGACTT
CCTGTGGAGACCAGCACCACACGTGTGACAAATCCGCAACAGTTTATTTG
TTAGATATTTTATTCAAATTGCTTCCTTCTCCTTGCAGAGTGTGCAGATG
AACAGCAATATTCTGTCCCCTCTGTACCTCCTAACTGCTCTTTCAGGAGA
TAATGACTGAGGTTAGATCTTCATTACAATGTTAGGTTGTACAGCCAGCC
TTATTTATTTTTCTCTACCTTGCTATTGTAATCACCAGGACCAGAAGCGT
GACTCCATGTATAATGTATTTATTTG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGA
ATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGA
TTTTCGAATATTAAACCATTCTTGTTTTCCTGGAATAAAACCTACTTGTT
CAGTATGTATGATTGTTTTAATGTGTTTTTGGTTTCGGTTAGCGACATAT
TTTTTTGATTATTTTTGCTTTTTTTCTTCTATTTATAATTAATTAAAAAT
AAAAAAATTTTTGGTGGTTTCCCAAACAGGCCCCCTATTTTTTATTTTTA
AATTATATAATCTACTTCCCCCCCCTCCTAAAAAAAAAAAAAAAAATTTT
TTTTCTGGTTGTTATTTTTTTCTTTTCATTTCTCTTTATATATATCATAC
TTTTTACTTACTTTTTTTTTATATTTTTATTTTTATCGCTATCTATTATT
CTTTCTCCTTATTTTTTTTATAATATACTTACACATACCATACTAAATTA
ATTTTATTTCGTCTTTACTCTCGACTAATAATATCTTTTATACAACACAT
TAATCATTACCATATCTGTTCTCTTTTATGTATACTTCAGTATAAAATTT
TTATTATATTATTTCCTAATATTTCTTTTATTTTATTTCTTTATTATGTC
TTTAATCTTCTCTGCTCTATCCTCTCACATATTATTTTTCTTCCTTTTAT
TTTATAATAAGTATATCACTCATTATTTTTTTTCTCCTATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_j12.b1 MSMg01no160_j12.b1 CHROMAT_FILE:
MSMg01no160_j12.b1 PHD_FILE: MSMg01no160_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:36 2005
         (311 letters)



>mm_chr14_104559536_104560244
          Length = 709

 Score =  582 bits (301), Expect = e-171
 Identities = 305/307 (99%), Gaps = 2/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttttatggttctcttcctacacaattttgtttaaaagattaaaaaaaaaaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 509 gaattcacttttatggttctcttcctacacaattttgtttaaaagatt--aaaaaaaaac 452

                                                                       
Query: 65  cagaatgtggctatcttgaagctttcttggtagttgctggagacgttaggtatatctaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagaatgtggctatcttgaagctttcttggtagttgctggagacgttaggtatatctaaa 392

                                                                       
Query: 125 aattattgcttcagatataacctacacaagtttccaattcaggatgctgcacagcaaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aattattgcttcagatataacctacacaagtttccaattcaggatgctgcacagcaaatc 332

                                                                       
Query: 185 tgaatgaaataagagcagacatcacttattaaataagcttatgggagcttgaaggtgctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgaatgaaataagagcagacatcacttattaaataagcttatgggagcttgaaggtgctg 272

                                                                       
Query: 245 gctggctcatggagtttgggagcatactaccaggcttgcacaaacatgtcttggaaagag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gctggctcatggagtttgggagcatactaccaggcttgcacaaacatgtcttggaaagag 212

                  
Query: 305 gcagttg 311
           |||||||
Sbjct: 211 gcagttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 709
Length adjustment: 9
Effective length of query: 302
Effective length of database: 700
Effective search space:   211400
Effective search space used:   211400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)