BAC Information

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BAC

Clone NameMSMg01-160L11
Chromosome14 (Build37)
Map Location 83,864,241 - 83,864,486
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160L11.T7 (MSMg01no160_l11.b1)MSMg01-160L11.TJ (MSMg01no160_l11.g1)
ACCAG360311AG360312
length761704
length of high quality
(start - end)
---241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no160_l11.b1 PHD_FILE: MSMg01no160_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:45 2005CHROMAT_FILE: MSMg01no160_l11.g1 PHD_FILE: MSMg01no160_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAAGACGGCTACATTTTTATGGTGGAAGAAAAGAATGA
AGAAGGTAATGTATGGCTGGAAAATATAACTTTGTAGCAATACTAACCCA
GTGTGTGAAAGAGATGATCCATGATGTTTATCACTCTCTGACGTTGATAT
TTTGGCTTTATTAGACTATGCGTTATGAATGTAGAGGATGGGCAGATACT
TGAGGTACTCAAAATAATCTCATGACTTCAGAGAATGAAGCATTGCTGTT
CTGAGAGAGATGTTATGTTCGGAGCTAATATATATGAAGCTAAGCGCCAT
ATTATTTTTTTTTAAACCCCCCCCCCCCCGCTTTTATGTCTATCTCTCGC
CCTTTTGTACCTTTGCCACACCAAAGATAAAAAACCTCCCTTCCTCGTAC
ATGATCAACACTCCATCGTTGCGAGACCGATTTTTCTTACCCACGCTTGT
TATTTTTTCAAATGTCACCCTTCCCAACTTTCCTTTGTCAAATATCTATT
CGTACTTTAAACCTCCCCCAATCTCTCTCACCCGCCCACCTTTAACTCCT
ACCCTCATTTTATTTCCCCTGTTTGCCTATTACTTATTTATAACGTCCTG
GAAACGGTTTAATACATTTCTTGGCATCCGTCCTACTTATTTCGTTCTAT
TACCGCTTTCATTTCTCCCACGCTAATATTTGTAATTTTTATCAATTGCA
AACCACTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAAGAAGATGAGTTAATAGAT
GGTGATACTCTGGTATTTTTAAGGATATGCACCAGTTTAAAAAAAATTAA
GAAATCCCAAGTAGAACCATACATAATATTTCATTAATAGTAGCATTTTA
AAAAGTAAATTACAGTTTTAAAGTAATAAAACTAGAAAAAATATTAAGGT
TAAAGGTTTAAAAATCTTCCTTTGAAACAAATCCATATTTTTATAATAGA
CCTGTAAATTCACCTACATTTTTTTTTTCAATATTTACATGTTTACCTAT
ATATAATTTANCTAAGCCTTAAAGCAANTCTCATTAATTATTTTACCTGT
CATATGTTATATAATGCAACAAAAGTTAGAAAAAATCCGTGTTGGGGGGA
TTTGAAAAGCCACCTGCAAAAGCAACAGAACTGAAGAAAGTCATAGAAGT
TAGAGACTCTAGATATATCAATTTATAAGAAGCCCTCAGGTAGACTAGGA
TCAAAGTGACATAGACGGAAGAGCTCAAACTTGAAATTCTCCAGGAAGCT
GTGTTTCTTTCTCTTTCATGCTATTATATAAGATGCACTACCTCACGCGA
GTGTAAAACTTTTTGAATTCTCACATGCGACACTGTAAATATTTGGGCAA
GAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_l11.g1 MSMg01no160_l11.g1 CHROMAT_FILE:
MSMg01no160_l11.g1 PHD_FILE: MSMg01no160_l11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:45 2005
         (241 letters)



>mm_chr14_83864041_83864686
          Length = 646

 Score =  398 bits (206), Expect = e-115
 Identities = 235/248 (94%), Gaps = 9/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcaagaagatgagttaatagatggtgatactctggtatttttaaggatatgcaccagt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcaagaagatgagttaatatatggtgatactctggtatttttaaggatatgcaccagt 260

                                                                       
Query: 61  ttaaaaaaaat-taagaaatcccaagtagaaccatacataatatttcattaatagtagca 119
           ||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tt--aaaaaatgtaagaaatcccaagtagaaccatacataatatttcattaatagtagca 318

                                                                       
Query: 120 ttttaaaaagtaaattacagttttaaagtaataaaactagaaaaaa-tattaaggttaaa 178
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 319 ttttaaaaagtaaattacagttttaaaataataaaactagaaaaaaatattaaggttaaa 378

                                                                       
Query: 179 ggtttaaaaatcttcctttgaaacaaatc-----catatttttataatagacctgtaaat 233
           ||||||||||||||||  |||||||||||     ||||||||||||||||||||||||||
Sbjct: 379 ggtttaaaaatcttcccatgaaacaaatcttatccatatttttataatagacctgtaaat 438

                   
Query: 234 tcacctac 241
           ||||||||
Sbjct: 439 tcacctac 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 646
Length adjustment: 9
Effective length of query: 232
Effective length of database: 637
Effective search space:   147784
Effective search space used:   147784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)