BAC Information

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BAC

Clone NameMSMg01-160L24
Chromosome14 (Build37)
Map Location 16,608,747 - 16,609,029
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160L24.T7 (MSMg01no160_l24.b1)MSMg01-160L24.TJ (MSMg01no160_l24.g1)
ACCAG360335AG360336
length732736
length of high quality
(start - end)
315 (49 - 363)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no160_l24.b1 PHD_FILE: MSMg01no160_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:48 2005CHROMAT_FILE: MSMg01no160_l24.g1 PHD_FILE: MSMg01no160_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGCTTCATTTAACATCAAAGGCCATACATCACAGCTTGACTA
TACTTCCTAGTAGTTACATTTTGTTCTTGTCTCTAGCTCCTTCCTTTTAC
TTAGACCATTTACTTATAGGATTTATAAATTAATTCTGTTTCTTCCTTCT
GATATATAAATCTTCTCTGCCCCATGCAGGTTTCAAACACCAGAAGGGCT
TTTCTCAAGGCCCTGGAGGTGATTCAATGAAGTGCACTCAGTAAGGAAGT
GATCCATGTAATACAAGTTCCAGTAAGAGGGGAGGGTCTTATCTGTAATC
AGCTAAACACTATTCTTTTTACACCCACCTCGAGTCCACTGAAAGCATGC
CTCTACAGCTGTCCATGGGCTTCCAGTATATTATGACTCTATTTAACTCA
TCTCATGCAGTGCTAATGATTTAATTTGCACTGTGAAGTTTTCCTTTGAT
AGGCCTCTGAAAGTTATATTGCCTTAGATGTTTTAAAGGACTGAAAAAAA
TTATCAGGTTAAGGCTGACAATCCAGGTTGGGGAGAAGGCTTGATGGACA
AAATGCTTGATGTGCAAGCATGAGAATTGTTCTAGTTTCTTTTCTGCCCC
TAACAAAACACTCTAACCAAAGAAACCTGTAGAAGAAAGGGTTTATTTGG
CTTACACTTCAAGGTCACAATCCATCACTGAG
TCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGGTTTTCAACCTGGTTCACATT
TAACTGATTGCATTATCTCTTCAAAACTGCTTCTCACATACTGTCTTTGG
GTCCTTGCTGAAGACACAGAGTGAGGTTTGAATGTCATACACACATTGGA
TTCCCATTAAAGAACAACAACAGAGACTAAAATGGGAAAGACATATTTGA
TGGTAAAGGGCAGGCTCTATGGGTCTCACACTCCTTGTAAAGACCTGTTT
GCTTTCAGTTACCAGGAAGCATAGGCTGAGCTGTGATGGGAAAGAGGATG
GTCCACTATAGTTTTTTTGCCCCCCCCTCCAGATTCAGGGAGGTGAATGT
AGTCAGTTCTTACCCTCTCCGGATCTTGAATTCTTTAATTTTAGCTTGGT
GATTCTCTATAAAAGGCTAGATAATATTAAATGGCGTGTAGGCTACAAAG
CAAAACTGAGGATCTATGTTGATAATTTTACAACAGGGAGAAAAGTCCAT
AAACATTTGAGGTGGTTCAATATATAAGTGATTAGTGTCTTAGTCAGGGT
TGGTATTGCTGTGAAGAAACATCCCAACTAAAAGCAACCTGGGGGATAAA
GGGTTTATTTTATCTTACACTTCCAGGTAGTGGTCAATTACAGAGAGATG
TCAGGGTAGGAATTAAAACAGCAGCAACTTGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_l24.g1 MSMg01no160_l24.g1 CHROMAT_FILE:
MSMg01no160_l24.g1 PHD_FILE: MSMg01no160_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:48 2005
         (285 letters)



>mm_chr14_16608547_16609231
          Length = 685

 Score =  547 bits (283), Expect = e-160
 Identities = 283/283 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggttttcaacctggttcacatttaactgattgcattatctcttcaaaactgcttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcaggttttcaacctggttcacatttaactgattgcattatctcttcaaaactgcttctc 424

                                                                       
Query: 61  acatactgtctttgggtccttgctgaagacacagagtgaggtttgaatgtcatacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acatactgtctttgggtccttgctgaagacacagagtgaggtttgaatgtcatacacaca 364

                                                                       
Query: 121 ttggattcccattaaagaacaacaacagagactaaaatgggaaagacatatttgatggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttggattcccattaaagaacaacaacagagactaaaatgggaaagacatatttgatggta 304

                                                                       
Query: 181 aagggcaggctctatgggtctcacactccttgtaaagacctgtttgctttcagttaccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagggcaggctctatgggtctcacactccttgtaaagacctgtttgctttcagttaccag 244

                                                      
Query: 241 gaagcataggctgagctgtgatgggaaagaggatggtccacta 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaagcataggctgagctgtgatgggaaagaggatggtccacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)