BAC Information

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BAC

Clone NameMSMg01-162K18
Chromosome14 (Build37)
Map Location 39,513,945 - 39,514,225
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162K18.T7 (MSMg01no162_k18.b1)MSMg01-162K18.TJ (MSMg01no162_k18.g1)
ACCAG361728AG361729
length692695
length of high quality
(start - end)
308 (47 - 354)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no162_k18.b1 PHD_FILE: MSMg01no162_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:06 2005CHROMAT_FILE: MSMg01no162_k18.g1 PHD_FILE: MSMg01no162_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCGTTTAGCTCTGTACCCCATTTTTTAAAATAGAGTTATTTGA
TTTTCTAGAGCCCATCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCCAATTTAGAATTGGTAAAGATACTTTCCCAATCTGTTGATGGC
CTTTTTGTCTTACTGACAGTGTCTTACAGAAGCTTTGCAATTTCATGAGG
TCCCATTTGTCAATTCTTGATCTTACAGCACAATCCATTGCTGTTCTGTT
CAGGAATTTTTTCCCCTGTGCTTGTGAGGCTTTTCCCCACTTTCTCCTCT
AAAGTTTCATTGCNTATGCCTTTCACTGGAGTTTCTTGGTCCGCATAGAC
TTGACCTTACCACAAAAAGATAAAAATGGATCAATTCGCATTCTTCTACA
TGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTT
TTCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATAAAGTGACCATGGA
TGTGTGGTTTTATTTCTGGGTCTTCAATTCTATTCCATTGATCTACCTGT
CTGTCATTGTACCAGTACCATGCAGTTTTTGTCACAATTGCTCTGTAGTA
CAGCTTTAAATCAGGCATGATGATTACACTAGAGGTTCTTTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCAGGCAATCATTACGTATTCAT
TATCTTTTCCAAGATAAAACACATCACAGCCCAGCAGTTGCTGTGTGGCC
CTCTTGTCAACACAACCCCGTTTCTGTCAAAGAGCTAGCAGAATTAGTCT
CACAGGCTGATGCAGGGTATGAATATAGGAAGTACACAGGACATGCTGTA
CAAGTTCAGAGGGCTAACATTCGTTCAATTCCCACCTCTCCCAGGAGTCT
TGAGAGGCTAGCCAACATCTTGAGCTCTGCTTATTAGATTTACAAATGAA
AACAATATCTTAGTTCTCGCGCCCGCCATGATACATGATAAAAAAGAGAA
TATAGTTATGTACTTACCACATTTTCAAAAAAATAATAAGCTACTATGGA
GCTTGAGTTGTTACGCTCTATAATATTTAAGTTTAATTACTGAGAACAAG
GATGGGTTGGGTATAAGTAGACACTGTTGTGAGACAATATGCTTTAAAGC
ACTTAGACAACTTCAAAGCACTGAATATATAGAAACAGATGACATCAGTG
TGCTGCTATTACTATCAAGAGAGCAGCTATTTGAAGAATGGCTACATTTT
CCCTTATGTGTGTAGTATGGTTTAAAATTTTCACGACTCTTTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_k18.g1 MSMg01no162_k18.g1 CHROMAT_FILE:
MSMg01no162_k18.g1 PHD_FILE: MSMg01no162_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:06 2005
         (281 letters)



>mm_chr14_39513745_39514425
          Length = 681

 Score =  513 bits (265), Expect = e-150
 Identities = 277/281 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accaggcaatcattacgtattcattatcttttccaagataaaacacatcacagcccagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accaggcaatcattacgtattcattatcttttccaagataaaacacatcacagcccagca 260

                                                                       
Query: 61  gttgctgtgtggccctcttgtcaacacaaccccgtttctgtcaaagagctagcagaatta 120
           |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||
Sbjct: 261 gttgctgtgtggccctcttgtcaacacagcctcgtttctgtcaaagagcttgcagaatta 320

                                                                       
Query: 121 gtctcacaggctgatgcagggtatgaatataggaagtacacaggacatgctgtacaagtt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcacaggctgatgcagggtatgagtataggaagtacacaggacatgctgtacaagtt 380

                                                                       
Query: 181 cagagggctaacattcgttcaattcccacctctcccaggagtcttgagaggctagccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagagggctaacattcgttcaattcccacctctcccaggagtcttgagaggctagccaac 440

                                                    
Query: 241 atcttgagctctgcttattagatttacaaatgaaaacaata 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcttgagctctgcttattagatttacaaatgaaaacaata 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)