ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGACCGCG
GAATTCTTCTCATTTGCTTCAGGCAGATAATAACTGCCACCAACTTAGCC
CTTACCCCCCTGCCAAGTACTGTGCTGAGACTTTAACACAGTGTCTTGGA
AACAGACAAAACACACCTAGATTTGTAGGCATAGGCACCACTTTATATTT
AAGGCAAGCAGCTAGTGTGGTTAAATAATTCATGTGGTTAATAAATACTT
AAAGAACCGGGCTGGGTGCTAATTCTTGGCATTATAATAAAGCAAGCTAA
TCATTTATCAGGACTTTCCCTAAAGTCCCTTCTTGTCCTTTCTCTTTTGA
GTTTTTGTGCCAAATGAGATTAAAACAGCACACCCCTGATTAAAAACTGA
AGAATCCGCAACTGTATTGATGAATTCTATCGGCTCTTCTACCCAGGGGA
CTGACCCTGCTGGACCTTTCTTCCTTTCTCTTTCCCAGTGTATGTAGCAG
TCTGCAGTTCTGTTTCAATGCAAATCAGCATTGCAGAGGGTAAGCCACAT
TCATCCTTGTTCTTTTTCTCAAGCTCTGAGTTCACAATTCACTAGCAAGG
AAAGGATTGGAAAGACATGTGCTCACTGGAAACAGGAGATCCGAGGAGCA
GAATCTAGTGTGGAAGGCAGACGGTCAAGGAAAAATTGCAAGTGCTCTTA
GTTTATTCTGCTTTCTCT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTTGCTGGCTGGGCCCGACCA
TCCCCAAAATGCAATGCCAAGGAGGCTTTCCGGGTGGTGCTCAATGGAGC
ACTCCCTGAAGTCACACTGTGGAGGAGCTGCAATATACTAGAAGCACCTT
GGGTTGGGATCTGGGGGCCCAATTACATAGGATTCAAAACAGATGGGACT
TGTGTGTCTGTGTTTAAATTAAGTACAATATGAGCATCCCTAATCCAAAA
CTGCAAAATTCAAAATGCTCCAAGTCTCAAAATGTTATGAACACAGACGT
GACTTCACAGGTGTGATANGCACCCTGACGAAACTCTTTAAAATACTGTA
TAAAATTTTCTTCAGGCTATGTGCATAAAACATATATGGGGAAAAAAAGA
GATGAATTTACAGCTAGGCACTATTCAATATTTCACTATGCATATTCCAA
GATCTAAAACAGTCTGAAATCATAGACTTCCAGTCCCAAGTACTCTGGAT
AAGAGATCCACCAATGTATAAGAGTGAACATACTCAAAACTACTACTAAT
ATGTCCTCTAGGAGAAAAAGGTGCTTCAAGTAGCTACCACAAAATATATT
AGTGCCACATAAAAACATTCAGAACCAACCTATTTTGAGAAAACAATCTT
AAGAATGCACTTTAGGGATGG

Query= MSMg01no162_p09.b1 MSMg01no162_p09.b1 CHROMAT_FILE:
MSMg01no162_p09.b1 PHD_FILE: MSMg01no162_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:27 2005
         (672 letters)



>mm_chr14_68656266_68657337
          Length = 1072

 Score = 1268 bits (656), Expect = 0.0
 Identities = 665/668 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttctcatttgcttcaggcagataataactgccaccaacttagcccttacccccc 64
           ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattcttctcagctggttcaggcagataataactgccaccaacttagcccttacccccc 813

                                                                       
Query: 65  tgccaagtactgtgctgagactttaacacagtgtcttggaaacagacaaaacacacctag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgccaagtactgtgctgagactttaacacagtgtcttggaaacagacaaaacacacctag 753

                                                                       
Query: 125 atttgtaggcataggcaccactttatatttaaggcaagcagctagtgtggttaaataatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 atttgtaggcataggcaccactttatatttaaggcaagcagctagtgtggttaaataatt 693

                                                                       
Query: 185 catgtggttaataaatacttaaagaaccgggctgggtgctaattcttggcattataataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 catgtggttaataaatacttaaagaaccgggctgggtgctaattcttggcattataataa 633

                                                                       
Query: 245 agcaagctaatcatttatcaggactttccctaaagtcccttcttgtcctttctcttttga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 agcaagctaatcatttatcaggactttccctaaagtcccttcttgtcctttctcttttga 573

                                                                       
Query: 305 gtttttgtgccaaatgagattaaaacagcacacccctgattaaaaactgaagaatccgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gtttttgtgccaaatgagattaaaacagcacacccctgattaaaaactgaagaatccgca 513

                                                                       
Query: 365 actgtattgatgaattctatcggctcttctacccaggggactgaccctgctggacctttc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 actgtattgatgaattctatcggctcttctacccaggggactgaccctgctggacctttc 453

                                                                       
Query: 425 ttcctttctctttcccagtgtatgtagcagtctgcagttctgtttcaatgcaaatcagca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttcctttctctttcccagtgtatgtagcagtctgcagttctgtttcaatgcaaatcagca 393

                                                                       
Query: 485 ttgcagagggtaagccacattcatccttgttctttttctcaagctctgagttcacaattc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttgcagagggtaagccacattcatccttgttctttttctcaagctctgagttcacaattc 333

                                                                       
Query: 545 actagcaaggaaaggattggaaagacatgtgctcactggaaacaggagatccgaggagca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 actagcaaggaaaggattggaaagacatgtgctcactggaaacaggagatccgaggagca 273

                                                                       
Query: 605 gaatctagtgtggaaggcagacggtcaaggaaaaattgcaagtgctcttagtttattctg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gaatctagtgtggaaggcagacggtcaaggaaaaattgcaagtgctcttagtttattctg 213

                   
Query: 665 ctttctct 672
           ||||||||
Sbjct: 212 ctttctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no162_p09.g1 MSMg01no162_p09.g1 CHROMAT_FILE:
MSMg01no162_p09.g1 PHD_FILE: MSMg01no162_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:27 2005
         (288 letters)



>mm_chr14_68496481_68497168
          Length = 688

 Score =  557 bits (288), Expect = e-163
 Identities = 288/288 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcttgctggctgggcccgaccatccccaaaatgcaatgccaaggaggctttccgggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcttgctggctgggcccgaccatccccaaaatgcaatgccaaggaggctttccgggt 260

                                                                       
Query: 61  ggtgctcaatggagcactccctgaagtcacactgtggaggagctgcaatatactagaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgctcaatggagcactccctgaagtcacactgtggaggagctgcaatatactagaagc 320

                                                                       
Query: 121 accttgggttgggatctgggggcccaattacataggattcaaaacagatgggacttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgggttgggatctgggggcccaattacataggattcaaaacagatgggacttgtgt 380

                                                                       
Query: 181 gtctgtgtttaaattaagtacaatatgagcatccctaatccaaaactgcaaaattcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctgtgtttaaattaagtacaatatgagcatccctaatccaaaactgcaaaattcaaaa 440

                                                           
Query: 241 tgctccaagtctcaaaatgttatgaacacagacgtgacttcacaggtg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctccaagtctcaaaatgttatgaacacagacgtgacttcacaggtg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)