BAC Information

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BAC

Clone NameMSMg01-164A06
Chromosome14 (Build37)
Map Location 99,848,333 - 99,848,885
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneLOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164A06.T7 (MSMg01no164_a06.b1)MSMg01-164A06.TJ (MSMg01no164_a06.g1)
ACCAG362637AG362638
length765744
length of high quality
(start - end)
318 (41 - 358)553 (70 - 622)
definitionCHROMAT_FILE: MSMg01no164_a06.b1 PHD_FILE: MSMg01no164_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:44 2005CHROMAT_FILE: MSMg01no164_a06.g1 PHD_FILE: MSMg01no164_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAACTTCACCTAAGGAGTCCACATTTGCAGCCTGGGCAAGGATTGCCATG
AGAGCAGCTCAGTCAATGTCTAAGAATCGATGTCCTCTTCCGTCTAACGT
GGAGGCCTTTCTGCCACAAGCCACTGGATTCAGATGGTGTGTAGTCCATG
GCAGGCAGCTCCCTGCACGTAAGAAAGGCTGGGTTCGCCTGCAATTTCTT
GCTGGACAGACCTGGGTTCCAGACACTCCCCAAAGGATGAATTTTCTCCT
CCTGTTACCGGCCTGTATTATCCCAGAACCAGGAGTGGAAGATAATTTTC
TATGTCCTGTATGTGTTCACACGCCCCCAGAAGATCCTTAAGAAACTTTT
AAAATTAAGAAGCCCCCGCNCTAATAAAAAAAATAGGCCCCTAACCCCCC
CAAATTTTGCTGGGCCCTTATTAAAAACACAAAATAATACCTCTTTATTA
ACCCCCTCGGGATCTCTCCTCATAAAAAGGGGGTAAAAAGTGTTTCGTAC
AAAAATAAATAATATTCTCCTCCCTTGCCGGTTGTTGTGATTATCCATCT
TCCTACCCTTTTTTCTTTGGGTGGGGTGATTTTTAATATTTCACCCACTT
CCATCCACTAATCATCTCCTTATATCCCCCACATTACAACTCTCCCCTTT
TTTTTTATCGTTTTTATGTATGTTATTTAACTCTTATTTTGTTTTATTTC
TCTTTCGTCTTTTCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGGGACACACAGGATGGGAGGCAGGAGATC
AGCTCTGCTCCGTGTCAGGATCAGGTAAGGCCTAGGCTCTGTCACTGGCT
GCACCACACTGAGAGTCACAGCTACTCCACCCAGCCCCGGAGCCACAAGA
CAGTCCACATTCACGTGCTCCCCACTTAACCACAGAGCACAGAAACAGAT
GAAACCTGTGCCGTGAAAAAGGGCCAGCCCTGGCTTTGAACAAAGAGCTT
TTAAAACAAAACCACAAAGGGAGTGAGTCACCACTCTCTCAACCTTTCTT
CTCCTGTGTGGCTTTAAGCCTCTTGTTTGTTTGGGGGTCTGACCTTGATC
TCATCGTTTGTATCTATTTGTTCAAATGAACCCAGAATTCCTTAAAATAC
CAAACTAATTTCTTTATTTCAGGTTTCCACATTAGGCACATGTACGTTGC
CAACCCCCGGACGACTCACAGTTTCTCAGAACATGCCTGGGTAATTTTTC
TTAGTGGCTTTTCCATGATAAGATTTGGAGTTTTGAATAAAAAACTTTGT
GGGAGGGGTTGTATAGAGAAAAGAAAACAACCCTACAACATTGAAGTGTT
TCTATTGAAGTGTTTCGAACATAGAATCTGAAAAAGGGGTGACTAACATG
ACTGGTTAGGAGCTTAAGATAGAATTGTGTCTTCTGAAAAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_a06.g1 MSMg01no164_a06.g1 CHROMAT_FILE:
MSMg01no164_a06.g1 PHD_FILE: MSMg01no164_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:44 2005
         (553 letters)



>mm_chr14_99848133_99849085
          Length = 953

 Score = 1069 bits (553), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggggacacacaggatgggaggcaggagatcagctctgctccgtgtcaggatcaggtaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggggacacacaggatgggaggcaggagatcagctctgctccgtgtcaggatcaggtaag 260

                                                                       
Query: 61  gcctaggctctgtcactggctgcaccacactgagagtcacagctactccacccagccccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctaggctctgtcactggctgcaccacactgagagtcacagctactccacccagccccg 320

                                                                       
Query: 121 gagccacaagacagtccacattcacgtgctccccacttaaccacagagcacagaaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagccacaagacagtccacattcacgtgctccccacttaaccacagagcacagaaacaga 380

                                                                       
Query: 181 tgaaacctgtgccgtgaaaaagggccagccctggctttgaacaaagagcttttaaaacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaacctgtgccgtgaaaaagggccagccctggctttgaacaaagagcttttaaaacaa 440

                                                                       
Query: 241 aaccacaaagggagtgagtcaccactctctcaacctttcttctcctgtgtggctttaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccacaaagggagtgagtcaccactctctcaacctttcttctcctgtgtggctttaagc 500

                                                                       
Query: 301 ctcttgtttgtttgggggtctgaccttgatctcatcgtttgtatctatttgttcaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttgtttgtttgggggtctgaccttgatctcatcgtttgtatctatttgttcaaatga 560

                                                                       
Query: 361 acccagaattccttaaaataccaaactaatttctttatttcaggtttccacattaggcac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acccagaattccttaaaataccaaactaatttctttatttcaggtttccacattaggcac 620

                                                                       
Query: 421 atgtacgttgccaacccccggacgactcacagtttctcagaacatgcctgggtaattttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtacgttgccaacccccggacgactcacagtttctcagaacatgcctgggtaattttt 680

                                                                       
Query: 481 cttagtggcttttccatgataagatttggagttttgaataaaaaactttgtgggaggggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttagtggcttttccatgataagatttggagttttgaataaaaaactttgtgggaggggt 740

                        
Query: 541 tgtatagagaaaa 553
           |||||||||||||
Sbjct: 741 tgtatagagaaaa 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)