BAC Information

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BAC

Clone NameMSMg01-164G21
Chromosome14 (Build37)
Map Location 39,324,085 - 39,324,371
singlet/doubletsinglet
Overlap geneNrg3
Upstream geneLOC382871, LOC382872, LOC100041521
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164G21.T7 (MSMg01no164_g21.b1)MSMg01-164G21.TJ (MSMg01no164_g21.g1)
ACCAG362910AG362911
length789744
length of high quality
(start - end)
215 (43 - 257)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no164_g21.b1 PHD_FILE: MSMg01no164_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:17 2005CHROMAT_FILE: MSMg01no164_g21.g1 PHD_FILE: MSMg01no164_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCATTGGTGGAAACCAACAATTCTTAAGGGTAAATCACATGCTGTAGA
TGATCAACACAAAATAAACTCAGTGCAATATTTGGAGTTTCTTTGTTCTT
TGTCTAGTAATGGTAAGTCAGTGGAATTGTTGTTTGTTTATTGTTGTTGT
TGTTATATCTACCTTACAGGTTGTTTCTGTATATATTATGGTTTCCAATT
TTGTGTTCTTGTACAATTACTGTGGGTATATATGTGTATATCTCTGCATC
TATAACCATTTGTACTATTATGATTATATTATGTGTCAGATAGAGATTAT
AAATTTTTTTTTTTTTCCCCCCCCCCCCCCCCCTTAATAAATTATTTAAA
TATTTTCTTTTTTCCCCCCCTTTAATATAAAATAATATATTTTTCGTGCG
TTCCTTTCCTTATTTTTTTTTTTTATTTTTATCCTCCTCTCTTTCTCTCT
TTTTCATATAATCAACTTCACTATTCAAACACCTTTCTACCTTTTTATCC
TATTTTTTTTAATTCCTATTATTTTCTATTTCATTTTTTTTCATCTTAAC
ATTTTAATATCCATTCCATTTCTATATTACTATTTATCACCTTTCACCAA
CATATATATCAATCAACAATTATTCTATTAATATTTCTACTTTTACCTCC
CCTATTTCTCTCCTTCTTTTTATTTTTCTACCTTTCATTTTCATATCTTC
CTATACTTTTTATTTTTTCTACACCTCTTCTTACAATCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTATATCCAGTATCTTGTACATCTTTTC
AGAGCACAGTCAGAGACTTCTTATTTGCAGAAGATAGTGAGCATGGATTT
GTCCACTGGTCATAAATCTCATTCTTTTGCATAGAAATGTTCATCCTGCC
TAGGAGCAATATCTTTGCCTCTTGATTCTCCTGTCATTGCGTGTTTTTTC
ATATAGCACTTAATAAAAGGAAATGGCCAGAGATTTTACTAGGTGGTCTT
CTACTGATGATGATTGAATTCATGAAAACAAGAAACTGTCTTTTCACTAG
GGATTGAATATTTTATATATCACCACAGTGCAATCAGTGAAAAATTGCTG
TGAGGAGAAAGGGATAAATCTGTGTTCTAGAAACACTGTTGCCATTTTTC
TTAGTAAAAGTAGACATTTTGTAATTTACATAAATTTTTGTCACTTCAAG
TGAACTGTAGGCAAGTCGAACTGACTCAGAATGATGAGGTTGCTTGTACC
TGAGGGGAGGGAGATTAAAATACATAGCTTCTGACTAGTATGATGGAAGA
GCCCTAAAAGCACTGGTTGTGATGGTAGTGGTGGTGCTCGTGTTGTTGCT
TTTTATTTTTCATCTTTTTATTTCTATCTACTTATTTTATTTCACTATTT
TTCTTTTTCTCTCTATTCTTTTTTTATTAATTATTTTTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_g21.g1 MSMg01no164_g21.g1 CHROMAT_FILE:
MSMg01no164_g21.g1 PHD_FILE: MSMg01no164_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:17 2005
         (287 letters)



>mm_chr14_39323885_39324571
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtatatccagtatcttgtacatcttttcagagcacagtcagagacttcttatttgcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtatatccagtatcttgtacatcttttcagagcacagtcagagacttcttatttgcaga 428

                                                                       
Query: 61  agatagtgagcatggatttgtccactggtcataaatctcattcttttgcatagaaatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agatagtgagcatggatttgtccactggtcataaatctcattcttttgcatagaaatgtt 368

                                                                       
Query: 121 catcctgcctaggagcaatatctttgcctcttgattctcctgtcattgcgtgttttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 catcctgcctaggagcaatatctttgcctcttgattctcctgtcattgcgtgttttttca 308

                                                                       
Query: 181 tatagcacttaataaaaggaaatggccagagattttactaggtggtcttctactgatgat 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tatagcacttactaaaaggaaatggccagagattttactaggtggtcttctactgatgat 248

                                                          
Query: 241 gattgaattcatgaaaacaagaaactgtcttttcactagggattgaa 287
           |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 247 gattgaattcatgaaaacaagaaactgtcttttcaccagggattgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)