BAC Information

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BAC

Clone NameMSMg01-164H19
Chromosome14 (Build37)
Map Location 84,026,326 - 84,026,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164H19.T7 (MSMg01no164_h19.b1)MSMg01-164H19.TJ (MSMg01no164_h19.g1)
ACCAG362949AG362950
length730739
length of high quality
(start - end)
327 (47 - 373)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no164_h19.b1 PHD_FILE: MSMg01no164_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:21 2005CHROMAT_FILE: MSMg01no164_h19.g1 PHD_FILE: MSMg01no164_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATATATCTGAGTTGCTATGAATTTAAACTTATATAAATATACAG
CTGGGGGAAATTATAAAATATGTGTACACCTTTATCTTCTCATTACACTA
AATGGGATAAACAGTATATGTTTTAGAATTCGAGCAGTGTACCATTTATA
CAGAAGTTTTGCTCTAAGATTTTAAATTGTGACATCAGTTTTAAAACTCA
GTGTATGTTGGTTGGATTTTATCTATATGCTTTGTATGTAAGCAACCATA
TATTCTAATCACATAATTTTATAGAAAATAGTACTTCTGCACTCAAAATA
CTATAGGTCTTCCTTTTGTATACACTGACTCCGCTATCCTTTCATTTCAT
TGTGGAGATAGCCTACCAACACCCCACACATACTTGTGAAATATTATAAA
AACACTATCAATTTTATTTTCTTCCATAATATTGTTTTTATGTTTTGAAA
ATGCACTTTTATCACAATATCAACTTGGAAAGAAATCCATCATTTTACGT
TCATGCATTATTTTTAAAAATTGGAAGGCAAACTGAGTTTATTTCAATTG
TATTTGATTTCACAGAGGAATGAATGTAAATTTGTGAACTGTTAGATTCC
AGTTAAAACTAGTTTATACAGATCTTCGTGATAAATACTTTTGTTTTAAC
TGCAATATTATTCCAAAATGCTGGCAATTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTATAGAAAAACAGGAAAAAACAT
CCAAACAGGTGATGGAAATGAACAAAACCACACTAGACCTAAAAAGGGAA
GTAGAAACAATAAAGAAAACCCAAAGAGAGGCAACGCTGGAGATAGAAAC
CCTAGGAAAGAGATCTGGAACCATAGATGCGAGCATCAGCAACAGAATAC
AAGAAATGGAAGAGAGAATCTCAGGTGCAGAAGATTCTATAGAGAACATC
GGCACAACAATCAAAGATAATACAATACGCAAAAAGATCCTAACTCAAAA
CATCCAGGAAATCGAGGTATTCAACGTGCCCGCACCCCACCTATGGATAA
TAGGAGTTGATGAGAATGAAGATTTCCAACTTAAAGGGTCAGCAAATATC
TTCAACAAAATTATAGAAGAAAACTTCCCAAACCTAAAGACTGACATGCC
CATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTTGACTAGAAAA
GAAATTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAA
GAGAGAATATTGAAAGCAGTAAGGGAGAAAAGTCAAGTAACATATAAAGG
AAGGCCTATCAGAAATACACCAGGCTTTTCACCAGAGACTATGAAATTCA
AAAGAGACTGGACAGATGTTATACAGACACTAAGAGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_h19.b1 MSMg01no164_h19.b1 CHROMAT_FILE:
MSMg01no164_h19.b1 PHD_FILE: MSMg01no164_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:21 2005
         (327 letters)



>mm_chr14_84026122_84026847
          Length = 726

 Score =  571 bits (295), Expect = e-167
 Identities = 316/323 (97%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatatctgagttgctatgaatttaaacttatataaatatacagctgggggaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 526 gaattcatatatctgagttgctatgaatttaaacttatataaatatatagctgggggaaa 467

                                                                       
Query: 65  ttataaaatatgtgtacacctttatcttctcattacactaaatgggataaacagtatatg 124
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ttataaaatatgtgta-agctttatcttctcattacactaaatgggataaacagtatatg 408

                                                                       
Query: 125 ttttagaattcgagcagtgtaccatttatacagaagttttgctctaagattttaaattgt 184
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 407 gtttagaattcgagcagtgtaccatttatacacaagttttgctctaagattttaaattgt 348

                                                                       
Query: 185 gacatcagttttaaaactcagtgtatgttggttggattttatctatatgctttgtatgta 244
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 347 gtcatcagttttaaaactcagtgtatgttggttggattttatctataagctttgtatgta 288

                                                                       
Query: 245 agcaaccatatattctaatcacataattttatagaaaatagtacttctgcactcaaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agcaaccatatattctaatcacataattttatagaaaatagtacttctgcactcaaaata 228

                                  
Query: 305 ctataggtcttccttttgtatac 327
           |||||||||||||||||||||||
Sbjct: 227 ctataggtcttccttttgtatac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space:   228006
Effective search space used:   228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)