BAC Information

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BAC

Clone NameMSMg01-164I12
Chromosome14 (Build37)
Map Location 103,631,161 - 103,631,467
singlet/doubletsinglet
Overlap genePhr1
Upstream geneLOC669278, Kctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441
Downstream geneLOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164I12.T7 (MSMg01no164_i12.b1)MSMg01-164I12.TJ (MSMg01no164_i12.g1)
ACCAG362979AG362980
length745743
length of high quality
(start - end)
320 (40 - 359)339 (69 - 407)
definitionCHROMAT_FILE: MSMg01no164_i12.b1 PHD_FILE: MSMg01no164_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005CHROMAT_FILE: MSMg01no164_i12.g1 PHD_FILE: MSMg01no164_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAAAGGAGGCAAAACCTTTTTAAAAGTCTTTTTATACTAATAAATGTTT
ATAAATCAATACTCTGATCTAAGTATGTTGCCAAGAGCCTTCAATAAAGC
TGATCACCTGCCTGAGTGTGTCACACATGTAAAATATTGACTAACTCAAG
AATGAAAATACAAATATATATATTTTTTTCTATTTTCAGTCTTGAGTTGG
TTATCTATATGAAAAATTAAGATTACACTTACTAATATATTCATATTCTA
CTTAACATTTCAGATAACAAGTCACAATGTAATGGATAGTGACTAAACTA
TTTTGTCTTTTTGTGTACCCGCCCCCCGGGGACAGAATATCTGTTTGTGT
GAAGACCTCCCCCCACATTTATAAGTGGATGAAACTGTTTAACAATGAAC
TTCTCAGAATATATTTCCAACACTGAGTGAAACATAGCTTTATATAGTTA
TATTTCCTTATTTTACCTTTAATAGATTATTCAAAAACTTCCTTTTTAAA
ATGTTTATTAAATTAAAATAAAATTTTTATTTCAAATGTGTAAAAACTTC
AGTGAAAAATGAGGAAAACATTTACCTAGCCGCACAGTCATAAGCCAACA
CATCAGTCTCTGCAAGAAGGTCTCCATCCGTTTCATGATCTCCTCTATAG
GAACCATTTCAAATAGCTAGAGTAGAGTAAAAACACATTGTTCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATAAACATCCATGTGCAGGTTTTTTTTGTG
TGTGTGTGGACATAAGTTTCCAGCTTCTCTGAATAAATACATTCCAGAAT
CTGTAATTGTCACTGGATCATATGGTCAGGATATGTTTAGTTTTGTAGGA
AACTGCCAAATTCTCTCCCCCAGGGGATGTACCATTTATATATATGAAAT
AAAGCTTCCAGTTGCATATGAGAGTTTGCATTGCTCTGTGTCCTCAGTGA
CATTTAGAGTTGTCAGTGTTCTGGATTTTGGGCATTCTGATTGATGGATC
TCATTGTTGTTTTAATCTGTATTAGTGTGCTAACACCTGTCTAGAACTCC
TTTTCAGCCCCCGGCTTGTTATTTCTCTATCTACTTTGGGGACATATCAA
GGATGTTTACTCACTTTTAAACTCCAACATTGTTGTTTTGGTACTGATGG
ATTAGAGAGTTCTTTTTTCTTTTCTTTTTTTAAAATTTACTTATTTATTT
TATGTGTGTGAGTACATCATTGCTGTCTTCAGGACACCAGGAGAGGGCAT
CTGATCCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGAATTG
AACTCAAGGCCTCTGGAAGATCAGTCAGTGCTCTTAACTGCTGAAGCATC
TCTCCAGCCCTAGAGAGTTCTTATAAAGTTTGGATTATAGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_i12.b1 MSMg01no164_i12.b1 CHROMAT_FILE:
MSMg01no164_i12.b1 PHD_FILE: MSMg01no164_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:25 2005
         (320 letters)



>mm_chr14_103630957_103631671
          Length = 715

 Score =  547 bits (283), Expect = e-160
 Identities = 303/313 (96%), Gaps = 7/313 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagaaaggaggcaaaacctttttaaaagtctttttatactaataaatgtttata 64
           |||||||||||||||||||||||||      |||||||||||||||||||||||||||||
Sbjct: 205 gaattccagaaaggaggcaaaacct------aagtctttttatactaataaatgtttata 258

                                                                       
Query: 65  aatcaatactctgatctaagtatgttgccaagagccttcaataaagctgatcacctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aatcaatactctgatctaagtatgttgccaagagccttcaataaagctgatcacctgcct 318

                                                                       
Query: 125 gagtgtgtcacacatgtaaaatattgactaactcaagaatgaaaatacaaatatatatat 184
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 319 gagtgtgtcatacatgtaaaatattgactaactcaagaatgaaaatacaaatatatgtat 378

                                                                       
Query: 185 ttttttcta-ttttcagtcttgagttggttatctatatgaaaaattaagattacacttac 243
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttttttttaattttcagtcttgagttggttatctatatgaaaaattaagattacacttac 438

                                                                       
Query: 244 taatatattcatattctacttaacatttcagataacaagtcacaatgtaatggatagtga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 taatatattcatattctacttaacatttcagataacaagtcacaatgtaatggatagtga 498

                        
Query: 304 ctaaactattttg 316
           |||||||||||||
Sbjct: 499 ctaaactattttg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 715
Length adjustment: 9
Effective length of query: 311
Effective length of database: 706
Effective search space:   219566
Effective search space used:   219566
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)