BAC Information

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BAC

Clone NameMSMg01-165C17
Chromosome14 (Build37)
Map Location 56,462,901 - 56,463,263
singlet/doubletsinglet
Overlap genenone
Upstream geneHomez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4
Downstream geneBC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C17.T7 (MSMg01no165_c17.b1)MSMg01-165C17.TJ (MSMg01no165_c17.g1)
ACCAG363410AG363411
length749751
length of high quality
(start - end)		367 (36 - 402)642 (65 - 706)
definitionCHROMAT_FILE: MSMg01no165_c17.b1 PHD_FILE: MSMg01no165_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:14 2005CHROMAT_FILE: MSMg01no165_c17.g1 PHD_FILE: MSMg01no165_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTCC
TGTTTACACAGGGCATCTCACCTATAACTCATCATCGAGACTATTAACCT
TTAAAGTTGAAAAGAGCGGGATTTTTAGAGTGAGAGCGTAGATTCTGGAT
CTGGGTGTGCCCTAACCCTGCCCCCCTTCTGAGCTAGGATCTTATGTGGC
TGAGGCTCTCCTTGAACTCTGATCTTCCTACCGATACAGTTCCAATTGAT
GAGATTACAGACTTGTGCCACCATGCGTGGCATGAGCTGGTGTTTTTAAC
CACTATATCCAACCTCTATCACCAAATGTTCTCCATGGGTAGTGATAACA
GAAAACTGTTGCTAAGGGGTCACTCAGCATGTTCGAGGAAGCCCGTGCCA
CGGTACAACCGATGTTCTTCAATTAGCCAGAGGCTGGGTTTATTATGGAG
TACAGAGAATCCTCTGTAAAAACTTCACCGTGGTTACAGTAGTCCGGGCA
AATGGTGTCTGCAGCATCTGCACCCACAAAGCTCAGAAGATGAGACTCTC
GTGGTCAGACCAGAGAAGCCTCAAATGAGCCAGCTGGCCACAAGACACTA
ACTTGACTGTACCGCTTTTCCTCCTGGGAACTTCACAGGCCCTGTTCCAC
CTGGACTTGGTGGTCTCTGTTTAGATACATTATTTTGTTCCTATTTATTT
AAAAATAGAATGGGATGGGGAGATGGTTTGATAGATTGCTTGCTTTGGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTG
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAAC
CCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAG
GTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCG
GTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTC
TCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGC
TCCACTACGCCCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTC
CTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACA
TTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGC
CCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGA
AACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c17.b1 MSMg01no165_c17.b1 CHROMAT_FILE:
MSMg01no165_c17.b1 PHD_FILE: MSMg01no165_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:14 2005
         (367 letters)



>mm_chr14_56462697_56463463
          Length = 767

 Score =  687 bits (355), Expect = 0.0
 Identities = 361/363 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtcctgtttacacagggcatctcacctataactcatcatcgagactattaacc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcctgtttagacagggcatctcacctataactcatcatcgagactattaacc 264

                                                                       
Query: 65  tttaaagttgaaaagagcgggatttttagagtgagagcgtagattctggatctgggtgtg 124
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttaaagttgaaaagagtgggatttttagagtgagagcgtagattctggatctgggtgtg 324

                                                                       
Query: 125 ccctaaccctgccccccttctgagctaggatcttatgtggctgaggctctccttgaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccctaaccctgccccccttctgagctaggatcttatgtggctgaggctctccttgaactc 384

                                                                       
Query: 185 tgatcttcctaccgatacagttccaattgatgagattacagacttgtgccaccatgcgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgatcttcctaccgatacagttccaattgatgagattacagacttgtgccaccatgcgtg 444

                                                                       
Query: 245 gcatgagctggtgtttttaaccactatatccaacctctatcaccaaatgttctccatggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcatgagctggtgtttttaaccactatatccaacctctatcaccaaatgttctccatggg 504

                                                                       
Query: 305 tagtgataacagaaaactgttgctaaggggtcactcagcatgttcgaggaagcccgtgcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagtgataacagaaaactgttgctaaggggtcactcagcatgttcgaggaagcccgtgcc 564

              
Query: 365 acg 367
           |||
Sbjct: 565 acg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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