BAC Information

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BAC

Clone NameMSMg01-165E09
Chromosome14 (Build37)
Map Location 90,260,149 - 90,409,087
singlet/doubletdoublet
Overlap geneEG328451
Upstream genenone
Downstream geneLOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165E09.T7 (MSMg01no165_e09.b1)MSMg01-165E09.TJ (MSMg01no165_e09.g1)
ACCAG363482AG363483
length732741
length of high quality
(start - end)		536 (38 - 573)668 (67 - 734)
definitionCHROMAT_FILE: MSMg01no165_e09.b1 PHD_FILE: MSMg01no165_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:22 2005CHROMAT_FILE: MSMg01no165_e09.g1 PHD_FILE: MSMg01no165_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,408,558 - 90,409,087)(90,260,149 - 90,260,816)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAATTCT
TCCATATATCGCTGTTTCACCTCTTTCAACAAATAAGCACACTTTTCATG
ATAAATGTTTAACTTTGACCAATATATTAATATCTATTATTGAACAAAAT
GGAACAACCGTGACTCTAATTAACTTGACAACTGCTAATAACATAGAAGG
GTGATTGTTATTTGATATAATTGCTATGACAATGTTGCTCTCTGAAATTC
AATAGAGGTTTTATCCACTGCACTTTTACTTTGATTTTCTAATATATCAC
TTTGAACTCTAAGAAGTAACAGCTGAGACATTCATTCCTTTTGACTACAG
ATAGCTTCAAAATTGATGGGAAGCCTGATTTTGATGACCCATTCAATACA
CAGGTCCCTTTTAAGATTTCCTAGTGTAGACATCAGTGACAAGAAATGTA
CATGTATTTCTGCAACATAAGAAAATAGAATTATTCATTGCAATTTTAAC
TTTAACAGAAATTAAGAGAGAGAGCTGAAGATTATACATTGATTTAAGTT
GATTTCTATAATAATTATGTGCAGNGAGAGNTTAATTCATATGATAAAAT
ATATCCTTGAATAACTTTAACATAAATTGAATGGGCACACTTGTATTCTG
ACTCCTATATATTAATATACAATTACCGGTCCCTAAACTCAGTACCCTAT
GCTCATTATTTCCTTCCATATATTCTACATTA

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATACACAGAAAAATTAAAATTCAAGGTGGTATA
TGACAGAGTTGAATTTTAACAAAGGTTTAAACTGAAATGTAAAATAGACA
GTTTTATATTTTTCTAAGATAGCTGCAGAGGCAACTTTTAAATTAATATA
ATAAAAGAGAGAGTAACTTGGAAAATCTGTAAGCAGCAGTGTATGGCAGT
TAAGTCCCATTATCCCAAATGTGAGGAATCATTGAGTATCACCAACATGA
GAGCCAAAACTTGAAAGAAAGCGCTGAAAAAAATTAATCAAAGCAAACAT
GTCATACATTTTTAAAGCATGTTTCTTTCTTTAGAATTTCTGATATTGTT
CCATTGCCTTGACAATTCCACCCAGAAATGAATTCATAAGCAGAGTCTGA
TACAATCCTCGGTTTCTTTTGTGAAATACATAGATAGGGATGAAACACTC
ATACTACTAATGCATTATTTTACAAAACTCTCACTTGACTATTTCAAATG
GCATGGTAGATGGAATGGAATATATTATTTCCTGAAAGGGAATGTGAGTG
ATATGCCGCATCTATCATTATACAATATCTCTGAAGGAAAGGGGAATCAT
GAACTCTAACAAAGTGGAAAAAGTCTTTTCTACTCCATCCTTCCCTTGTT
TCCCACATCCTGTGCATAGAGGAATTCTTCTCCTCAAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_e09.b1 MSMg01no165_e09.b1 CHROMAT_FILE:
MSMg01no165_e09.b1 PHD_FILE: MSMg01no165_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:22 2005
         (536 letters)



>mm_chr14_90408352_90409287
          Length = 936

 Score = 1009 bits (522), Expect = 0.0
 Identities = 528/530 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttccatatatcgctgtttcacctctttcaacaaataagcacacttttcatgata 66
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gaattcttccatagatggctgtttcacctctttcaacaaataagcacacttttcatgata 677

                                                                       
Query: 67  aatgtttaactttgaccaatatattaatatctattattgaacaaaatggaacaaccgtga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aatgtttaactttgaccaatatattaatatctattattgaacaaaatggaacaaccgtga 617

                                                                       
Query: 127 ctctaattaacttgacaactgctaataacatagaagggtgattgttatttgatataattg 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ctctaattaacttgacaactgctaataacatagaagggtgattgttatttgatataattg 557

                                                                       
Query: 187 ctatgacaatgttgctctctgaaattcaatagaggttttatccactgcacttttactttg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctatgacaatgttgctctctgaaattcaatagaggttttatccactgcacttttactttg 497

                                                                       
Query: 247 attttctaatatatcactttgaactctaagaagtaacagctgagacattcattccttttg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 attttctaatatatcactttgaactctaagaagtaacagctgagacattcattccttttg 437

                                                                       
Query: 307 actacagatagcttcaaaattgatgggaagcctgattttgatgacccattcaatacacag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 actacagatagcttcaaaattgatgggaagcctgattttgatgacccattcaatacacag 377

                                                                       
Query: 367 gtcccttttaagatttcctagtgtagacatcagtgacaagaaatgtacatgtatttctgc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gtcccttttaagatttcctagtgtagacatcagtgacaagaaatgtacatgtatttctgc 317

                                                                       
Query: 427 aacataagaaaatagaattattcattgcaattttaactttaacagaaattaagagagaga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacataagaaaatagaattattcattgcaattttaactttaacagaaattaagagagaga 257

                                                             
Query: 487 gctgaagattatacattgatttaagttgatttctataataattatgtgca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gctgaagattatacattgatttaagttgatttctataataattatgtgca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no165_e09.g1 MSMg01no165_e09.g1 CHROMAT_FILE:
MSMg01no165_e09.g1 PHD_FILE: MSMg01no165_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:22 2005
         (668 letters)



>mm_chr14_90259949_90261016
          Length = 1068

 Score = 1292 bits (668), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacacagaaaaattaaaattcaaggtggtatatgacagagttgaattttaacaaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatacacagaaaaattaaaattcaaggtggtatatgacagagttgaattttaacaaaggt 260

                                                                       
Query: 61  ttaaactgaaatgtaaaatagacagttttatatttttctaagatagctgcagaggcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaactgaaatgtaaaatagacagttttatatttttctaagatagctgcagaggcaact 320

                                                                       
Query: 121 tttaaattaatataataaaagagagagtaacttggaaaatctgtaagcagcagtgtatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaattaatataataaaagagagagtaacttggaaaatctgtaagcagcagtgtatgg 380

                                                                       
Query: 181 cagttaagtcccattatcccaaatgtgaggaatcattgagtatcaccaacatgagagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagttaagtcccattatcccaaatgtgaggaatcattgagtatcaccaacatgagagcca 440

                                                                       
Query: 241 aaacttgaaagaaagcgctgaaaaaaattaatcaaagcaaacatgtcatacatttttaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacttgaaagaaagcgctgaaaaaaattaatcaaagcaaacatgtcatacatttttaaa 500

                                                                       
Query: 301 gcatgtttctttctttagaatttctgatattgttccattgccttgacaattccacccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatgtttctttctttagaatttctgatattgttccattgccttgacaattccacccaga 560

                                                                       
Query: 361 aatgaattcataagcagagtctgatacaatcctcggtttcttttgtgaaatacatagata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgaattcataagcagagtctgatacaatcctcggtttcttttgtgaaatacatagata 620

                                                                       
Query: 421 gggatgaaacactcatactactaatgcattattttacaaaactctcacttgactatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggatgaaacactcatactactaatgcattattttacaaaactctcacttgactatttca 680

                                                                       
Query: 481 aatggcatggtagatggaatggaatatattatttcctgaaagggaatgtgagtgatatgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aatggcatggtagatggaatggaatatattatttcctgaaagggaatgtgagtgatatgc 740

                                                                       
Query: 541 cgcatctatcattatacaatatctctgaaggaaaggggaatcatgaactctaacaaagtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cgcatctatcattatacaatatctctgaaggaaaggggaatcatgaactctaacaaagtg 800

                                                                       
Query: 601 gaaaaagtcttttctactccatccttcccttgtttcccacatcctgtgcatagaggaatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaaaaagtcttttctactccatccttcccttgtttcccacatcctgtgcatagaggaatt 860

                   
Query: 661 cttctcct 668
           ||||||||
Sbjct: 861 cttctcct 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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