BAC Information

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BAC

Clone NameMSMg01-166A15
Chromosome14 (Build37)
Map Location 100,999,529 - 100,999,882
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668672, EG546623, Klf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166A15.T7 (MSMg01no166_a15.b1)MSMg01-166A15.TJ (MSMg01no166_a15.g1)
ACCAG363990AG363991
length752736
length of high quality
(start - end)		361 (48 - 408)327 (78 - 404)
definitionCHROMAT_FILE: MSMg01no166_a15.b1 PHD_FILE: MSMg01no166_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:25 2005CHROMAT_FILE: MSMg01no166_a15.g1 PHD_FILE: MSMg01no166_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCAAAACTCGTAATCTTAGATGCCGCCTGCATGCTTACTCCC
TATTTGTAGCTTCTACCTTCAAGGTAAAAACAGCAAAGAATCCATCCTAG
TATTTATCCCTTGACATTCAGTTTCCATCCTCCTTTCTTGGGCCAACACT
CAACTCTATTAATCTAAAAGCATTGTGTTCTGAAATAATACCAATAGAAG
TTCCTTGTTTGTTTCCTTTTCTCTCCAAATCCAGGCAAGGGCATAAACAG
CATTTTTTTTCTTTTGCCATTTGGATGTAAATATTTACCAAGTAAATAAA
GATTCTAAAAAAAAGGCCAACAAACAAACAATAAACACTTTTAATTAAAA
CTATAATCTGATTCCCCCCCCACCAAAAAGAACAAAACTTTTGCTAATGC
CTAACGATGACTATATTCTTTAATTGAAAATTGATATTTTCTCAGGCATT
GCTCTAAAGCACATGCTTTTTTTGTCCATATTAACTTATTATCCTAAAAA
TACTGCCTCTCACTTTCACATCCCCCACCCCATTATTTTGTGTGTTTTTC
ATACTATCTATATCTCTTTTATACTAAGCCCCATTTTTTAATTTTTTTAA
TACAATTTTTAAACATCTTTTTTTTCCTACTCACTGTTGCTTTTATATTT
CCCACCTCAACCATATTACTACCAATCATTTTTTTTGTTTCTACCCTTTC
TT

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
GATCAGTCTGGCGGTTCCTCTTAAAACTGGATATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGATTTTTTCCCCCCCTTTTTTCATAGNAGCCTTATTTATAATAGCC
AGAATCTGGACGGATCCCAGATACTCCTCAATATAGGAATGGATACAGAA
GATGCGGTACATCTACACAATGTTTTACTATTCAGCTAAAACAAATAAAG
ATCTTATCCACATCTTTGTTACTTTTCTTTACCTTTTTCCCTCATTATGT
CCGTTCTTCCCCCCCCTTATTAATCCCCTACTTAGGAAACACATGAAAAT
TTTTTTTTCTTATAAATTCCCGATTTATTTTATTATAACCATATTATCTT
TCCACATAACACTTTATACTACTTATCTATTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_a15.b1 MSMg01no166_a15.b1 CHROMAT_FILE:
MSMg01no166_a15.b1 PHD_FILE: MSMg01no166_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:25 2005
         (361 letters)



>mm_chr14_100999325_101000084
          Length = 760

 Score =  642 bits (332), Expect = 0.0
 Identities = 350/356 (98%), Gaps = 3/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaaactcgtaatcttagatgccgcctgcatgcttactccctatttgtagct 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaattcttcaaagct-gtaatcttagatgccgcctgcatgcttactccctatttgtagct 500

                                                                       
Query: 65  tctaccttcaaggtaaaaacagcaaagaatccatcctagtatttatcccttgacattcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctaccttcaaggtaaaaacagcaaagaatccatcctagtatttatcccttgacattcag 440

                                                                       
Query: 125 tttccatcctcctttcttgggccaacactcaactctattaatctaaaagcattgtgttct 184
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttccatcctcctttcttgggacaacactcaactctattaatctaaaagcattgtgttct 380

                                                                       
Query: 185 gaaataataccaatagaagttccttgtttgtttccttttctctccaaatccaggcaaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaataataccaatagaagttccttgtttgtttccttttctctccaaatccaggcaaggg 320

                                                                       
Query: 245 cataaacagcatttttttt-cttttgccatttggatgtaaatatttaccaagtaaataaa 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 cataaacagcatttttttttcttttgccatttggatgtaaatatttaccaagtaaataaa 260

                                                                   
Query: 304 gattctaaaaaaaaggccaacaaacaaacaataaacacttttaattaaaactataa 359
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gattctaaaaaaa-ggcaaacaaacaaacaataaacacttttaattaaaactataa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 760
Length adjustment: 9
Effective length of query: 352
Effective length of database: 751
Effective search space:   264352
Effective search space used:   264352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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