BAC Information

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BAC

Clone NameMSMg01-166D17
Chromosome14 (Build37)
Map Location 101,816,007 - 101,954,918
singlet/doubletdoublet
Overlap geneTbc1d4
Upstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421, LOC382936
Downstream geneCommd6, Uchl3, Lmo7, LOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166D17.T7 (MSMg01no166_d17.b1)MSMg01-166D17.TJ (MSMg01no166_d17.g1)
ACCAG364121AG364122
length736791
length of high quality
(start - end)		325 (51 - 375)265 (81 - 345)
definitionCHROMAT_FILE: MSMg01no166_d17.b1 PHD_FILE: MSMg01no166_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:40 2005CHROMAT_FILE: MSMg01no166_d17.g1 PHD_FILE: MSMg01no166_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,816,007 - 101,816,327)(101,954,654 - 101,954,918)
sequence
NAAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGAAGACATCAACATATGTGAGTGAGACTTCATATGCAG
ATATTATATCTTGAACAAGCACATAAACAAATATCAACTTTTCCCAATTT
CTCATGAGTTGTGAAGCAGCCAGCCCAGCATAGAATTTAATAAACTAGAG
AAGGAGATATACAGAGACAGAAAGGAAAAGAGACTGGCCCCAAGCAGAAG
CTGGGAACTCAGTCAGGCATAGCAGCTAAGTGTAGCCAGCATTGATTTTG
TAAACTTGAAGTTAATATTAAAACTCACGATAAACCATTCATACTTGATA
CATATTTTATGCTGTTATTACTTATAAAACACACCCAACAGAGATATTGC
TCAATAATACGAGTTTCATATATCCCCCACTTAAATTTTTAACATTTTCA
TGAAAATCTAAACAGCTTATCACAGGACATTTATGAAAAGATATGGGTAC
TGAATGGTTCCTCCTTGTTGAGAATTTATACTGGTGCCATAACAGTATAC
AAAGATAGGACTACCCCTGACCAGCTCCTCTTTAAAAGGCAGCTGATGCT
TGCCTCGGCCTAAGTGTGCCATAGCCTGACCCAACACCTCCCCAGAGCAG
GGAAGGGCCCCACATGGCTACTTCAGCACTTGGATTTGTAGCTCCTTGTT
CTGAAGAACAGAAACGGACTGCTAGAGCTGCAAATA

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACTGTAAGTGCAAGGGG
TCCAGCCCTTCCAGGGCTGCTGTCTGGAGGTAGCAACTCACACAGGCGAT
GAACTTGAGAGTGAATGCAGGAGGAATGGGAAGTGTGTGTAGGGAGGCCC
CTGGCTTCAAGATGGTGCCTCAGTGGTGTGGCTGTAACTTCCTGCTCTGA
AGGTTCAGCCTTAATATTATCCTTAAAGTTCACAGGTCTGAAAAGATGTG
TCTGGGGTCTGGTCCCTCATTTGTTTTTTGTTTGAAGGGTTTTTGATTGC
CTATGTCTTTCCCTCTCTCTTTTTTTCTCTCCTCCCCTTTTTTGTTTTCT
CTTCCTCTGTATAGTTTTTGACCCCCCCCCCCCAANATATTTATATTTGT
TTTTATTTTTTTTTTTTTTATACTCTCCTCTTTTTTTTCTTTTTTTTTCT
TCGTCACCTCTTTTGTTTATTACTTTTATATCCTTCCCCTTCTCTTTTTG
TGCCTGGTATTTTTTTTTTTTTTCCCTTTTTTAATATACCTCCCTTTATC
TTATTCTTACCAATTTTTTTTTTTCTCTCCTATCCCCTTCTCCTTTTATT
TTTCACACTTCTCTTTCTTTCCTTTTTTATTTCTTTAGCATTACCACCCT
TTTACCCTTTATTTGTATCTTCCAATTTTCTCTTCTTTATTTTTGCCCCT
TCCTTTTTCTATTTTTTTTGTTCGCTCTCCTTTCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_d17.b1 MSMg01no166_d17.b1 CHROMAT_FILE:
MSMg01no166_d17.b1 PHD_FILE: MSMg01no166_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:40 2005
         (325 letters)



>mm_chr14_101815803_101816527
          Length = 725

 Score =  605 bits (313), Expect = e-177
 Identities = 319/321 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgaagacatcaacatatgtgagtgagacttcatatgcagatattatatcttga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaagacatcaacatatgtgagtgagacttcatatgcagatattatatcttga 264

                                                                       
Query: 65  acaagcacataaacaaatatcaacttttcccaatttctcatgagttgtgaagcagccagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acaagcacataaacaaatatcaacttttcccaatttctcatgagttgtgaagcagccagc 324

                                                                       
Query: 125 ccagcatagaatttaataaactagagaaggagatatacagagacagaaaggaaaagagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagcatagaatttaataaactagagaaggagatatacagagacagaaaggaaaagagac 384

                                                                       
Query: 185 tggccccaagcagaagctgggaactcagtcaggcatagcagctaagtgtagccagcattg 244
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggccccaaacagaagctgggaactcagtcaggcatagcagctaagtgtagccagcattg 444

                                                                       
Query: 245 attttgtaaacttgaagttaatattaaaactcacgataaaccattcatacttgatacata 304
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttcgtaaacttgaagttaatattaaaactcacgataaaccattcatacttgatacata 504

                                
Query: 305 ttttatgctgttattacttat 325
           |||||||||||||||||||||
Sbjct: 505 ttttatgctgttattacttat 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_d17.g1 MSMg01no166_d17.g1 CHROMAT_FILE:
MSMg01no166_d17.g1 PHD_FILE: MSMg01no166_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:40 2005
         (265 letters)



>mm_chr14_101954454_101955118
          Length = 665

 Score =  482 bits (249), Expect = e-140
 Identities = 261/265 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactgtaagtgcaaggggtccagcccttccagggctgctgtctggaggtagcaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 ttcactgtaagtgcaaggggtccagcccttccagggctgctgtctggaggtggcaactca 406

                                                                       
Query: 61  cacaggcgatgaacttgagagtgaatgcaggaggaatgggaagtgtgtgtagggaggccc 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 405 cacaggcgatgaacttgagagtgaatgcaggaggaatgggaagtgtgtatagggaggccc 346

                                                                       
Query: 121 ctggcttcaagatggtgcctcagtggtgtggctgtaacttcctgctctgaaggttcagcc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 345 ctggcgtcaagatggtgcctcagtggtgtggctgtaacttcctgctctgaaggtttagcc 286

                                                                       
Query: 181 ttaatattatccttaaagttcacaggtctgaaaagatgtgtctggggtctggtccctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ttaatattatccttaaagttcacaggtctgaaaagatgtgtctggggtctggtccctcat 226

                                    
Query: 241 ttgttttttgtttgaagggtttttg 265
           |||||||||||||||||||||||||
Sbjct: 225 ttgttttttgtttgaagggtttttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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