BAC Information

Click to search

BAC

Clone NameMSMg01-166L12
Chromosome14 (Build37)
Map Location 97,277,149 - 97,277,540
singlet/doubletsinglet
Overlap geneLOC668654
Upstream gene4921530L21Rik, Klhl1, LOC100043366
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166L12.T7 (MSMg01no166_l12.b1)MSMg01-166L12.TJ (MSMg01no166_l12.g1)
ACCAG364456AG364457
length822749
length of high quality
(start - end)
272 (45 - 316)568 (77 - 644)
definitionCHROMAT_FILE: MSMg01no166_l12.b1 PHD_FILE: MSMg01no166_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:18 2005CHROMAT_FILE: MSMg01no166_l12.g1 PHD_FILE: MSMg01no166_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGAAAGATCCCGTTCTGCTGATCCAAAGCTGCAGGATCTCCATAA
TACATGGCAACAACAGCATAAGGCAGGAGTCCCTGTGAGGGATACTGTAG
CAGAACCCAGTGCCTCGAAACAGAATAAGACTTGCTCATTGCAATGAACA
TTTGAAAGTAAAGATGTATAAAATGTAGTGAGTATTGTGTGACGTAGTGT
GACACACTATAGCCTGTACACAATGTATCATTTTAAAATTCTGTCTCATT
TTATTTTATTTTGGCGGGAATGTTTTTTTCTCCCCTTCCTCTCCCCACCA
CACGATTAATCTTTTTTCCCCTCTTTTCTCTTTTTATACCCCCCTTTTTA
CTTACCCCCATTTTTTTGGGGGCCCCCCCCCCATATTTTTAACTCATTTT
TTACTATCTCTTTCCCCCTCACTCTCTTTTTTTTCCCCCCCCCTTTTTTT
TTCTATTTTTCCTTTTTTTCTCCCCCCCCTCCTTTTATTTATCTTTTCTA
TATCTTATTTCCCCTTTTTCCACCCTCCGTTTTTTTTTTCCCCCCCCTTT
TTTTTTCCCCACCACCCTTTACCCCCTCTACCTATTTACACCCTTCACCC
TTTTTTCTCCCCCTTTTTTCGCCCTTTTATCCCCCCTCTCCCTCCCTTAT
TTTTTCCCCCCCCTCCTCCCCCCTTTCTATTTTCCCCCCTTTTTTTTTTT
CCCCCATTATCCCTCCCATTCCCCCTTTTTCCCCCCCCTCCCTTTTTATA
TTTCCCCCACTTTTTCTCCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGTTGGTTATAAGTCACTTGAGA
TGGAGACTGAACCAAACATAGCTTGTCTACAAACAAGTGCTCTTAACCAT
TAAGCCATTTATCAATTCACATGATTGATATTTTTATCAGCAAAAAAAAG
CTTTTGACCACTACTCCTTATAAAATACATTTTCTTATATATGGTAAATG
CAGCACACGCTGAAGAGATGGCTCAGTCATTAGGAACATGGGTTACTCCT
GCAGAAGACCTCAATTCATTTCCCAGGACTCGATGAAGGTGGCTCACAAC
TGTCTGCTATCTTCAGCTTCAGGTTATTAGAAGATCTCTTCTAGTCTCCT
TGGGTTCTCATATACACCCGCATACCCCTGACACACATACATATACACAC
AAACATACATGTAAAAATCAAAAACCTTACATATGGTAAAACAAATAATT
AAAACTTAAATTTATAGGTGTAATTAATCATTATTGAAATAAAGGTATAT
ACATCATTATGTATGTATCAAATTCATTTTAACATTTAACATCCATTTTA
ACATTTTTCAGATTTTGGCAGGGTACTAGAGTTTTTATTTTCTAATAGCC
TGCGCCAGTGTGTGTCAGTAGAAAGTATTAATTTTCAATCCATCCTACTT
TTACCATCGATAATCTGTATATAATATTAGAATCTGATCTTTCATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_l12.g1 MSMg01no166_l12.g1 CHROMAT_FILE:
MSMg01no166_l12.g1 PHD_FILE: MSMg01no166_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:18 2005
         (568 letters)



>mm_chr14_97276573_97277540
          Length = 968

 Score =  719 bits (372), Expect = 0.0
 Identities = 387/392 (98%)
 Strand = Plus / Minus

                                                                       
Query: 174 gcagcacacgctgaagagatggctcagtcattaggaacatgggttactcctgcagaagac 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gcagcacacgctgaagagatggctcagtcattaggaacatgggttactcctgcagaagac 909

                                                                       
Query: 234 ctcaattcatttcccaggactcgatgaaggtggctcacaactgtctgctatcttcagctt 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 ctcaattcatttcccaggactcgatgaaggtggctcacaactgtctgctatcttcagctt 849

                                                                       
Query: 294 caggttattagaagatctcttctagtctccttgggttctcatatacacccgcatacccct 353
           ||||||||||||||||||||||||||||||||||||||||||||| |   ||||||||||
Sbjct: 848 caggttattagaagatctcttctagtctccttgggttctcatatatatgtgcatacccct 789

                                                                       
Query: 354 gacacacatacatatacacacaaacatacatgtaaaaatcaaaaaccttacatatggtaa 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gacacacatacatatacacacaaacatacatgtaaaaatcaaaaaccttacatatggtaa 729

                                                                       
Query: 414 aacaaataattaaaacttaaatttataggtgtaattaatcattattgaaataaaggtata 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 aacaaataattaaaacttaaatttataggtgtaattaatcattattgaaataaaggtata 669

                                                                       
Query: 474 tacatcattatgtatgtatcaaattcattttaacatttaacatccattttaacatttttc 533
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 668 tacatcattatgtatgtatcaaattcattttaacatttaacattcattttaacatttttc 609

                                           
Query: 534 agattttggcagggtactagagtttttatttt 565
           ||||||||||||||||||||||||||||||||
Sbjct: 608 agattttggcagggtactagagtttttatttt 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)