BAC Information

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BAC

Clone NameMSMg01-168H20
Chromosome14 (Build37)
Map Location 89,489,498 - 89,636,020
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043317, LOC100043780, LOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168H20.T7 (MSMg01no168_h20.b1)MSMg01-168H20.TJ (MSMg01no168_h20.g1)
ACCAG365657AG365658
length792735
length of high quality
(start - end)
204 (46 - 249)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no168_h20.b1 PHD_FILE: MSMg01no168_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:45 2005CHROMAT_FILE: MSMg01no168_h20.g1 PHD_FILE: MSMg01no168_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,635,824 - 89,636,020)(89,489,498 - 89,489,780)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCAAACTAGAAGATTCATCCCTGTAAACAATCATTTTGTTGC
TTTTTCCTCCCTCCATTCATTCCTATGGCCTGAAACTCGCAAATCGTTGC
CCTTTTTCTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTATGACAAAGGA
ATGGAAATATGCAATCCCAGGAGGTGGTAGGTGAGAGGTGGGAGGTTTTT
TTATTCCCCTTACACTCCTCTCTCTTACTTTACTCATTCTCCCTTTCCCC
CATGGAAACATTTTTTTTTTTCCCCGCCGCCCCAAACCATAAAGAAAAAG
ATTTAAAATAAGTTTCAANAACAAAAACCCCTTTTTTTTTTTTTTTATTT
TGTTTGGTTTTGGNNCCCCAAAAATNTTATTTAAAAATTCTGGGGGGGTG
GGGGGGCTTAACCCCTTCTACCTATTTCCCTCCTTTTTTTTTTTCATCCC
CTCCATTTCCCTCCTTTAATTATAATTTCACCTTCCATCTTTTTTTCTTT
TTTACTCCTTTTTCTCCTCTTTTTCTTTTATTTTTTCCCTATTACTTACA
TTATACTCTTTATTCTTTTCCATACTTCCCTTATTTTTCTTATCCCAACC
TTTTTGCCTTACTTTTTCATTCTTCCCCCTCTTTACCTCCACTTTTTTTC
CCCACCCCCCCCTTTACTTTTATTTTTTAATTCCCCCCTTTTCTTACCCC
ATACCTTCTTTATTATTCCACTTTATTTATCCCCTTATTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGTGCAAAACTTTCAATTTTTTC
AACAAAAATTTACCTTTCATATAAAATATTAATTTAAAGTAAAATAACAA
CAGTACTGAGTAATATAGATACTATATAGGCTAGCTTCATTAAATTAATC
AGCCACTGACTCCAACCTTGATGTCTCTTCTAATTATGCATGATGCATGG
TTTCTTTCACAAGAAGACAACTAATTAATTAGATACAAATGTCATCCATA
GGTCGTTAACAGATAGGATGATTACTGATGGTTTGGTTTAGTCCAAGGCA
ACTTAATACTTCTTGTTTATCCNAAGCANACCCATCTTAAATCAAAAATA
TCTCANACAGAATGATTTTAAAACAAAAAAAAAAACTAGACCAATAATCC
TTATATTTCATGTAATAGCAACTCTTACCTAATCTGAGCACTAATAGCAA
CTTTCTCATATACACATATGTATAAAGTTCTTAATAAAACATGTAAGTAG
AAAAGAAGAAATTATCTGTCATATTGGTCTAAAAACATTAAACATTTTCC
TATTTGTAAAGGATAATGTGCTGCTTAAAAATATAAGATGTAATTTACTT
GGATTGTTTTACAGAAACGAATAAAGTATTCTCAAATTAAAGAAAGGGAA
ATAAGTTATTATTATCTATACTTAAAACATCAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_h20.b1 MSMg01no168_h20.b1 CHROMAT_FILE:
MSMg01no168_h20.b1 PHD_FILE: MSMg01no168_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:45 2005
         (204 letters)



>mm_chr14_89635708_89636311
          Length = 604

 Score =  381 bits (197), Expect = e-110
 Identities = 197/197 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttccaaactagaagattcatccctgtaaacaatcattttgttgctttttcctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattctttccaaactagaagattcatccctgtaaacaatcattttgttgctttttcctc 254

                                                                       
Query: 65  cctccattcattcctatggcctgaaactcgcaaatcgttgccctttttcttgttttgttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 cctccattcattcctatggcctgaaactcgcaaatcgttgccctttttcttgttttgttt 194

                                                                       
Query: 125 tgttttgttttgttttgtttatgacaaaggaatggaaatatgcaatcccaggaggtggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tgttttgttttgttttgtttatgacaaaggaatggaaatatgcaatcccaggaggtggta 134

                            
Query: 185 ggtgagaggtgggaggt 201
           |||||||||||||||||
Sbjct: 133 ggtgagaggtgggaggt 117


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no168_h20.g1 MSMg01no168_h20.g1 CHROMAT_FILE:
MSMg01no168_h20.g1 PHD_FILE: MSMg01no168_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:45 2005
         (283 letters)



>mm_chr14_89489298_89489980
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgcaaaactttcaattttttcaacaaaaatttacctttcatataaaatattaattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgcaaaactttcaattttttcaacaaaaatttacctttcatataaaatattaattta 260

                                                                       
Query: 61  aagtaaaataacaacagtactgagtaatatagatactatataggctagcttcattaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtaaaataacaacagtactgagtaatatagatactatataggctagcttcattaaatt 320

                                                                       
Query: 121 aatcagccactgactccaaccttgatgtctcttctaattatgcatgatgcatggtttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcagccactgactccaaccttgatgtctcttctaattatgcatgatgcatggtttctt 380

                                                                       
Query: 181 tcacaagaagacaactaattaattagatacaaatgtcatccataggtcgttaacagatag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaagaagacaactaattaattagatacaaatgtcatccataggtcgttaacagatag 440

                                                      
Query: 241 gatgattactgatggtttggtttagtccaaggcaacttaatac 283
           ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatgactactgatggtttggtttagtccaaggcaacttaatac 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)