BAC Information

Click to search

BAC

Clone NameMSMg01-171G17
Chromosome14 (Build37)
Map Location 23,390,521 - 23,390,755
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392
Downstream geneLOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171G17.T7 (MSMg01no171_g17.b1)MSMg01-171G17.TJ (MSMg01no171_g17.g1)
ACCAG367669AG367670
length731738
length of high quality
(start - end)
320 (45 - 364)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no171_g17.b1 PHD_FILE: MSMg01no171_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005CHROMAT_FILE: MSMg01no171_g17.g1 PHD_FILE: MSMg01no171_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGAGGTTTTGAACTTTGGACTTTTATATAGTGTTGACATTGTGAA
AGTCTATAGTGACTCTTGAAGCTCGATGTAATGCATTTTGCACTATGATA
TGGTTGTGAGCTCATGTAGGGCAGAGAGTAGAATGACACTATTGGAATGA
GACTGGCCCCAGTAGGCTCATCAGTTTGAGCACCTGGTCTCCAGTGTAGG
AAGTGTTTGGGAAGGACGAGGAGGTGTGGCTTTATTGGAGAAAGAGTATC
ACTGGGGGTGGGTTTTGAGGTTTCTAAGGACTTGTGCCATTTCCAGTTAG
CTTTTTCTTTGTTCATCTCCANAGACTNTCCCCTCCACCAAGCTCTAATC
CCCAAATTAAATACTTTCTCTCATAAAAAACCTCAGTCATGACATTTTAT
CACAGTAATATCAAAGTTACCAAGAATCTTACTATTAATTACACTGCTTA
TCCAACACTCACATCTCTGTTACTTATGAGCTGGTAAGCCTCACCAGGGT
CAAGGACATTAGATAGTCTGTTCTTCTACTTGTATATGGCCTGGCATTAG
CCTTTGCCCACAGTGATTCCTAGTGTACTAAATGAATGAATGAGAGAATG
GATAATATAAAGGCTGACCATCCATGTGCATTCTCTGGGCTGCTACGTCT
CATGCCTGGGAAATTGGCTTGATTTCCCGTG
ACGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTCCTCGCCCTCTGAGAAAATGAT
GTTTGCTTGCCTTGGTATATGCCGGGTAATGCATCTGGTGTCCAGTCATG
CTAGCCTCTTTGCTTTTGCTATCTGGAAGCACTGAATTAAATTCTGAAGG
TCCTACCTACTAAAAGGTAATAATCTGTCATCTCTACTATCTGCTTTCCA
ACATCATTGTTAAGGATTACAGTTTTAGAGCCTTGATGTTTTATTTATCT
ATGCAACCCCTTTAAACTGTATTAACTCTAATAAGCTAGCTCAAGCCCTT
GCTGTTTTTATGTTTCTCACCCCCCCACAGCACTTCGTGCATCTCTTCAC
AGTTACTGTGCACAGAGGGAAATTACAATGAGAGCAGCTTCTCAGGAGAT
ACTTGACAAGGAATAGAGAGGATACAGTGTGTCCAAAGGCAAGTGGCTTT
GGTGAAACTTTTAATGATCCTTGTAGCAGGAAGACAAAGGGTCAGCTTGA
AAATATCTTTAGGTACAGACACAAATGGTTCAAGTATAACCACTGGGCAT
GGTGGCACACAGCTGTAGTACCAGATCTCAGGAGGTAGAGGCAGAAGGGT
CAGAAGTACAAGCTTACCTTCTTTGGATATATAATGAGTTTGCAGCCAGC
CTGCCCTACGTGTGATCCTCAATGAAACCAAAAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_g17.g1 MSMg01no171_g17.g1 CHROMAT_FILE:
MSMg01no171_g17.g1 PHD_FILE: MSMg01no171_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:38 2005
         (234 letters)



>mm_chr14_23390321_23390955
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaatgcatctggtgtccagtcatgctagcctctttgcttttgctatctggaagcactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaatgcatctggtgtccagtcatgctagcctctttgcttttgctatctggaagcactga 376

                                                                       
Query: 61  attaaattctgaaggtcctacctactaaaaggtaataatctgtcatctctactatctgct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 375 attaaattctgaaggtcctacctactaaaaggtaataatctgccatctctactatctgct 316

                                                                       
Query: 121 ttccaacatcattgttaaggattacagttttagagccttgatgttttatttatctatgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttccaacatcattgttaaggattacagttttagagccttgatgttttatttatctatgca 256

                                                                  
Query: 181 acccctttaaactgtattaactctaataagctagctc-aagcccttgctgttttt 234
           ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 255 acccctttaaactgtattaactctaataagctagctcaaagccctcgctgttttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space:   140850
Effective search space used:   140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)