BAC Information

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BAC

Clone NameMSMg01-171G18
Chromosome14 (Build37)
Map Location 23,390,520 - 23,390,752
singlet/doubletsinglet
Overlap gene1700112E06Rik
Upstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, EG665075, EG435392
Downstream geneLOC665068, Kcnma1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171G18.T7 (MSMg01no171_g18.b1)MSMg01-171G18.TJ (MSMg01no171_g18.g1)
ACCAG367671AG367672
length751739
length of high quality
(start - end)
126 (46 - 171)233 (128 - 360)
definitionCHROMAT_FILE: MSMg01no171_g18.b1 PHD_FILE: MSMg01no171_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005CHROMAT_FILE: MSMg01no171_g18.g1 PHD_FILE: MSMg01no171_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGAGGTTTTGAACTTTGGACTTTTATATAGTGTTGACATTGTGA
AAGTCTATAGTGACTCTTGAAGCTGGATGTAATGCATTTTGCACTATGAT
ATGGTTGTGAGCTCATGTAGGGCAGAGAGTAGAATGACACTATTGGAATG
AGACTGGCCCCAGTAGGCTCATCAGTTTGAGCACCTGGTCTCCAGTGTAG
GAAGTGTTTGGGAAGGACGAGTAGGTGAGGCTTCCCTGATAAAAGAAGCA
CTTCTCCAGCCACCATTTTTTTTTTTCXXXXXXXXXXXXXXXXXXXXXAA
GCTTTTTTTGGTANTTCCCAAAACCANACCCCCTTAAGTTTTTAGTATAA
AATTTTTGGGGCCCCCCCCCTTATAAAAAAAAAANAATTTGGTGTTGGGC
CCTTTCTTACTGCACACCATTACCATTGCTGCCCCCCCTTTTTTTTCTCC
CCACTTTTGCTCTTATTCTTTTTTATCCCCCCCTCTTTTTCCCACCCTTT
TTTCTTTTTTTTCCCCCTGCTCAGCCTTTTTTTTTTTATACCTCTCTTTT
ACCCCCGCCTTTACCCCCTCCCCTCTTTTTTCTCCCCCTTCTTTCCTCTC
TGTCTCACACTTTTTCCCTTTTTTTCCTTTCCCCCCCCTTTTTCCCCCCC
TTTCCTTCCCCCCTTTTTTTTCCCCTTTTTTCTCCCCCTTTTATCTTTTT
G
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGGTCCTCGCCCTCTGAGAAATGATG
TTTGCTTGCCTTGGGACATGGCGCGCAATGCATCTGGTGTCCAGTCATGC
TAGCCTCTTTGCTTTTGCTATCTGGAAGCACTGAATTAAATTCTGAAGGT
CCTACCTACTAAAAGGTAATAATCTGTCATCTCTACTATCTGCTTTCCAA
CATCATTGTTAAGGATTACAGTTTTAGAGCCTTGATGTTTTATTTATCTA
TGCAACCCCTTTAAACTGTATTATCTCTAATAAGCTAGCTCAAGCCCTTG
CTGTTTTTATAGGGTTCATTGCCCAAACAGNACTTCGTGCATCTCTTCAC
AGTTACTGTGCACAGCCCCCAAATAACAAAAAGAAACAACTTCTCAGGAG
ATACTTGACAAGGAATAGAGAGGATACAGTGTGTCCAAAGGCAAGTGGCT
TTGGTGAAACTTTTAATGATCCTTGTATCAGGAAGACAAAGGGTCAGCTT
GAAAATATCTTTAGGCACAGACACAAATGGTTCAAGTATAACCACTGGGC
ATGGTGGCACACTGCTGTAGTAACAGATCTCACGAGGTAGAGGCACAAGG
GTCATAAGAATAGCTTACCTTCTTTGGAGAAAAAATGAGATTGCACCCCT
ATCCGGTCTATTGCGCAATTTTTACCTCCATTCCATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_g18.g1 MSMg01no171_g18.g1 CHROMAT_FILE:
MSMg01no171_g18.g1 PHD_FILE: MSMg01no171_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:38 2005
         (233 letters)



>mm_chr14_23390320_23390953
          Length = 634

 Score =  420 bits (217), Expect = e-122
 Identities = 229/233 (98%), Gaps = 1/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcatctggtgtccagtcatgctagcctctttgcttttgctatctggaagcactgaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atgcatctggtgtccagtcatgctagcctctttgcttttgctatctggaagcactgaatt 374

                                                                       
Query: 61  aaattctgaaggtcctacctactaaaaggtaataatctgtcatctctactatctgctttc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 373 aaattctgaaggtcctacctactaaaaggtaataatctgccatctctactatctgctttc 314

                                                                       
Query: 121 caacatcattgttaaggattacagttttagagccttgatgttttatttatctatgcaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 caacatcattgttaaggattacagttttagagccttgatgttttatttatctatgcaacc 254

                                                                
Query: 181 cctttaaactgtattatctctaataagctagctcaa-gcccttgctgttttta 232
           |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct: 253 cctttaaactgtattaactctaataagctagctcaaagccctcgctgttttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 634
Length adjustment: 9
Effective length of query: 224
Effective length of database: 625
Effective search space:   140000
Effective search space used:   140000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)