BAC Information

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BAC

Clone NameMSMg01-172L19
Chromosome14 (Build37)
Map Location 81,619,196 - 81,619,484
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172L19.T7 (MSMg01no172_l19.b1)MSMg01-172L19.TJ (MSMg01no172_l19.g1)
ACCAG368556AG368557
length1,050732
length of high quality
(start - end)
---290 (66 - 355)
definitionCHROMAT_FILE: MSMg01no172_l19.b1 PHD_FILE: MSMg01no172_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:16 2005CHROMAT_FILE: MSMg01no172_l19.g1 PHD_FILE: MSMg01no172_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGGCGGCTCGCTAATACGAACTTCACTATAGTGGAGAGGCATCCGCGT
GAATTCAACGTACTAATATTCGAATATGGTGAGGTTAGATGAATAGGCGC
AGCCCTTGGTCAATTTCCCTTAATATTATGTTGAGTAATTGTCTCCAAGT
AATCTTCTCTCATTTTACGCTTGGATGTCTGTGCTACTCGGTATTCCTAG
TATCATTATCTTTATTATACTGTCGCTGTACACTGTGCGACCTCTCGAAT
GTCTTTGATTCTCTTCCTTAGTAATTATTATTCATTGAACCGCTTTGCCC
GAGTCTTATCTCTCCGAGCTCTTTCTTCCCGTTTCTCCCTGCTTTTTTTT
TGCCACATCTTACCGCTTTTCCCTACCTTTGTATTATTCGCCTTTCTTTT
TTGTTTTCTACCTTATTATGTTATTAATTTAGTAGTATTATATTTTATTG
GGTGGATTTTCCCCCCGCGCCCCCCCCCCCTAAATTTGTTTTAATTTTTA
ACCTTATATGTGTCTCCCCCTTTCCCCCCCCCTTATTACATATATAATAT
TATCACCCCTCTCTCTCTTCTCTCCGTATTTTCGCCCTTACTTATCTTTC
GTTTTTTATACTCTCTACTACTCCGTCCTCTTTACCTGCCCGCCTTATAT
TTTCTCCGCTACACTCTCCCATTTTCTTATATTATTTTCCACTCTTTCTC
TATTACTCCTCACTTCTCTCTTTTTTCTCCCTCTTCTACGCTCTTCTTCT
CTCCCCCTTTCTATCCACCACTTTATTTTTTTTCTCACCCCCATCCCCTT
CATTTTATTTTCCTTCGTTCTTCACATTTTTTCCCCGTGTCCCCCTTTTC
ATCCGTTATTATATGGTTGAATCTTCGTTTCACTCCAATCCATGCCCGTT
TAACCTCTCTTTACCACCACTCTCTCCTATCTATATTATACTTTCTTCTC
TCCTACTCCTCCTTCTTCTTTATCTCCTCGCCTCTTCTCTCCTCCTATTT
TTCTACTCCTTCCCTCTTTATTTATCCACTTCCTCCCTCCTCCTCCTACN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCAGTTAATCTTTCTATAACACAAGCATCATTTTTG
TATAATAAGTTTGAGTCAGATTTATTGTATAAGGAAAACAACCCTCACAT
GTGTGCATATTCTTTACCGCTTATATCTATTTTGCTTCTAGTTAAGAGGT
TGGCAGAGCTAATGGAAAGTTAATTCCAGCTGTTTATGAAAAATCCTTTC
CCTCTTTTTTATGACCACTACAGTCTAATGAGTTTGTTGTTACTTACATG
AGCATAAATTAAAGAGGGTCTGCATCATCAAAGCCCACATCAGCATGGGT
GACAGCTCTCTTAACTACCCCCCCACAACTCAATGCACAGCCTGCAGACA
GCTCAGCAGGCTGAAGAGTGTCCATTCCAGATGCCCCAGTTGCTCTACAT
CTCTTCCAGGTAGTTGGTCTGGTCTTCTGGCTTCCCTTCATCTCAGAGGA
ACTCTTAGCTTTTATTGCTTACTCTGCCAGGAGGTGCCTAGAGGATCTGG
AAAATTCTAGGGACTTTCTGAGGCTTCCATGAGTTGTTTCCCTTCCTGCC
CAAGAAGTTTCCTTGTAAGATTAACCCAAAAACCTTGTAGGAAATATTTA
CAGAATCTTTTATAGTGAACGCCTCCTGTCTCCCCCCATACCTTTTCCCT
TTTGCCTTTCCCCGTTACCCTCTGTTTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_l19.g1 MSMg01no172_l19.g1 CHROMAT_FILE:
MSMg01no172_l19.g1 PHD_FILE: MSMg01no172_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:16 2005
         (290 letters)



>mm_chr14_81618996_81619685
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttaatctttctataacacaagcatcatttttgtataataagtttgagtcagatttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 cagttaatctttctataacacaagcatcatttttgtataataagtttgagtgagatttat 260

                                                                       
Query: 61  tgtataaggaaaacaaccctcacatgtgtgcatattctttaccgcttatatctattttgc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtataacgaaaacaaccctcacatgtgtgcatattctttaccgcttatatctattttgc 320

                                                                       
Query: 121 ttctagttaagaggttggcagagctaatggaaagttaattccagctgtttatgaaaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctagttaagaggttggcagagctaatggaaagttaattccagctgtttatgaaaaatc 380

                                                                       
Query: 181 ctttccctcttttttatgaccactacagtctaatgagtttgttgttacttacatgagcat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccctcttttttatgaccactaaagtctaatgagtttgttgttacttacatgagcat 440

                                                             
Query: 241 aaattaaagagggtctgcatcatcaaagcccacatcagcatgggtgacag 290
           ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattaaagaggg-ctgcatcatcaaagcccacatcagcatgggtgacag 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)