BAC Information

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BAC

Clone NameMSMg01-173E11
Chromosome14 (Build37)
Map Location 15,402,815 - 15,403,100
singlet/doubletsinglet
Overlap geneLOC667152
Upstream geneSynpr, A430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1
Downstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173E11.T7 (MSMg01no173_e11.b1)MSMg01-173E11.TJ (MSMg01no173_e11.g1)
ACCAG368932AG368933
length695708
length of high quality
(start - end)
244 (63 - 306)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no173_e11.b1 PHD_FILE: MSMg01no173_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:55 2005CHROMAT_FILE: MSMg01no173_e11.g1 PHD_FILE: MSMg01no173_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGAATTCT
CCTTTTCCAGAATGAATAATGGCTAACTGAGTTGTTAACCAAAGGGGACC
AACCCAAGAACACCCTCAAACCCAGGATACTGACAAGGCTTTTGTTTGCT
CCCCACAAACTGATAGTAGTATATAGTTTTGTTGAAGATGGGATGCACCT
ACACATCTTACTCTACCTGGAGAAGTCAAGCTGGTGCCTAACTAGAGACT
TCATGCCTACTAATAGTGTTCATGGTACTAAAAGGTACTCTATATCCTGT
CAGAGGATATAGTGAGACATCAACCCAGCTATAAACCCTTTAATTGACAA
TGGTAACCTGCCTGTAACATCTACTGGTAAAATAGTGGCACAAAGCTTAT
AGGAGTAATCAACTAATATCTGTTTGGTTATAAGGTCTACTCCAAGAGAA
GAAATCCATGTGTGATACTGCTTAGGAGGCCAGGAACCTGGGACTGCATA
AAACATAAATTTAGGGAATATCCAAGTATGTTCTACTAAAGGAACAAAGT
CAATAAAATTACTCCTAATGAAATTCTGTTAGACACCAATCAATCAGTGT
CTTGTTCAGCCATCATTGTTCTTGCAGCAGATGACAACAAATGCAGAAAT
CCTCAGCTGCTCCCAGTTGCAGCGAGACTTCTGAGCTACTAAATC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTTTAAGTACCTGAAGTTTTT
AACATGATTCAAGCAGACCTTACCCCTGGCTTTGTGGCTAAGTGGAACAG
TCTCATGTTGAGTAATAGAATTGAGTAATTTTCCAAATTGGAATCAAAAG
AGTCAGAGTTAGAGTCAGGGGTGCCTGCAGTACAGGTGATTATTAATGCT
AAGTCTTCTCAGTAGACATATTTAAGAAATATAAACTTCTTAAACAATCA
TTTTGTGGTATCATTTACAAACTATAAAATTCACATTTGTTAAGTACTCA
GAGTTTGAGGGATATATTAAGCGCTCACGCACCACACTGGTACACATTTT
TAAAACTCCATAGTTTCAAATGTTCATTTGTGCTTCTGGGTAAATTCCTT
GCATTGGTCTGTCACTGATCTGACCCAAGTCACTATGTGTTGGTTGTGCC
TAGTATAAAAGTCCATATGAATCCTGGAATGCCCCCCAGCTACATTTGCT
CAATGAGGAAAATGTCCCCATCAGATTGTCTTTGGGAAAATCTGTAGTTC
ACTGGTGATTCCTCGTTGGTGACTGATGAGGGAGGGTCCAGCTCAGTGTC
GGTGGAGCCATCCCTGGGCTGGTGGTCCTAGGTTCTGTAAGACAGCATGC
TGAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_e11.g1 MSMg01no173_e11.g1 CHROMAT_FILE:
MSMg01no173_e11.g1 PHD_FILE: MSMg01no173_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:55 2005
         (286 letters)



>mm_chr14_15402615_15403300
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtttaagtacctgaagtttttaacatgattcaagcagaccttacccctggctttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 cttgtttaagtacctgaagtttttaacatgattcaagcagaccttagacctggctttgtg 260

                                                                       
Query: 61  gctaagtggaacagtctcatgttgagtaatagaattgagtaattttccaaattggaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaagtggaacagtctcatgttgagtaatagaattgagtaattttccaaattggaatca 320

                                                                       
Query: 121 aaagagtcagagttagagtcaggggtgcctgcagtacaggtgattattaatgctaagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagagtcagagttagagtcaggggtgcctgcagtacaggtgattattaatgctaagtct 380

                                                                       
Query: 181 tctcagtagacatatttaagaaatataaacttcttaaacaatcattttgtggtatcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagtagacatatttaagaaatataaacttcttaaacaatcattttgtggtatcattt 440

                                                         
Query: 241 acaaactataaaattcacatttgttaagtactcagagtttgaggga 286
           |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaacaataaaattcacatttgttaagtactcagagtttgaggga 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)