BAC Information

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BAC

Clone NameMSMg01-174G02
Chromosome14 (Build37)
Map Location 118,621,294 - 118,773,804
singlet/doubletdoublet
Overlap geneSox21, LOC100043825, EG668814
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539
Downstream geneLOC435422, Abcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174G02.T7 (MSMg01no174_g02.b1)MSMg01-174G02.TJ (MSMg01no174_g02.g1)
ACCAG369693AG369694
length721731
length of high quality
(start - end)
321 (45 - 365)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no174_g02.b1 PHD_FILE: MSMg01no174_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:14 2005CHROMAT_FILE: MSMg01no174_g02.g1 PHD_FILE: MSMg01no174_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,773,489 - 118,773,804)(118,621,294 - 118,621,585)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACTTCTTTATAAAAGGATGTTTCTAATCATAACAATATCCAATTT
CTAATTACTTTCTCCTTTTGAAAGGCCTTCTCCTGGTTAGTTGAATTGAA
AGCACTCGGTTGGGGAGTTTTCAAAAAGAAAAGATTTCTCCAGATACATG
GCTCTTGTACGCATAATGTTATCAAGAAATATTTTGTCCAACAACCACCA
CCCAACCCACACACAATGGTCTCTTAAAATTCTAACTGAGCCTTTAGCCG
ATGAAGAACTAAGTGGAATTTAAATCATCGCTATTTAAGGTGACTGGCCT
TGTGAGTGAGCTTATATTGTTGTGACCGCCCCGCCACAGTTCCCAGGGTA
CAGAAACACTGACATGTTCCCTGCCCAGTCGATCCCCACGCTCACACCTG
GCAGAGACCAGCCACACATCAGGGCTCAGTTCACACTCTTCCCAAGGCCG
TAATCCCTCTGTGGTCTCACTGCACCATGAGTAGCCATCGCTGCTGTATT
ATGGATATTCCTACTTCACCTCGAAGGAGGCATTTAGCATCAGATGAGGC
TCTTCTTCCCTGGACCATGCCTGGTTTGAATGATTGTGGAATCTCTTATA
ACAACAAAAATATTAAATGAAGCCCAGTTGGAACATATGTGTGTTCATCA
TTATGTGCCTATCATGCCTCA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAACTCCCAAAGGCATTCCAA
AGCACACTCCAAAGGTCACATGAAAGGCCCCCCGAGCTCAACCCTTGACT
TCAACTTTTGAGACTAAGCAGATGGCACAACCGCACCATAACTCCTATTT
GAAACCTATAGCTCTGAGAGCTCAAATGGGTACCATTCAAGCCACTGCAT
TTGAAATATTAATTAGTAACAGGACTAACAAAACCACCAAGAAAGCATAG
ACAGAGAGAAGGAGATGCTAAAGAACTGAGTCCTGGCCAAGTATTAAAGC
TCACAGAAAGAGGAGGTATNGTGTTTATTCCCCCCCCCCCGTTGAGAGGG
TTGAAGGAGGATGACTAAAGTCAGTGCGGAGCCAGAAAGAACAGGCCCAG
TGATGAGAAGTAGAAAGGTGACGTCAGAGAAGGGCAACCCTCACAAGAGG
ATTATAAGAAAGAAGATGACACAGAAGCAAAGATGGCCAACATGGACATC
TTACAATATGGAAGACATTTATTGCAGGAAGAGCCTAGATGTGAGGCAGG
AACTGGAGGAAGAAGCCAGCGAGGTGCTGGGGCTTTTGCTGTCCCCTTCG
GTTTTTTGCTCGCTCTTGCTCTTTGCGCCGCGTTGTTGCACCTTTTCCCA
CGTCTCTTTTTTTTTCTCTTTTCCCTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_g02.b1 MSMg01no174_g02.b1 CHROMAT_FILE:
MSMg01no174_g02.b1 PHD_FILE: MSMg01no174_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:14 2005
         (321 letters)



>mm_chr14_118773285_118774005
          Length = 721

 Score =  565 bits (292), Expect = e-165
 Identities = 310/316 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacttctttataaaaggatgtttctaatcataacaatatccaatttctaattac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattcaacttctttataaaaggatgtttctaatcataacaatatccaatttctaattac 461

                                                                       
Query: 65  tttctccttttgaaaggccttctcctggttagttgaattgaaagcactcggttggggagt 124
           |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tttccccttttgaaagggtttctcctggttagttgaattgaaagcactcggttggggagt 401

                                                                       
Query: 125 tttcaaaaagaaaagatttctccagatacatggctcttgtacgcataatgttatcaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tttcaaaaagaaaagatttctccagatacatggctcttgtacgcataatgttatcaagaa 341

                                                                       
Query: 185 atattttgtccaacaaccaccacccaacccacacacaatggtctcttaaaattctaactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 atattttgtccaacaaccaccacccaacccacacacaatggtctcttaaaattctaactg 281

                                                                       
Query: 245 agcctttagccgatgaagaactaagtggaatttaaatcatcgctatttaaggtgactggc 304
           |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 280 agcctttagccgatgaggaactaagtggaatttaaatcattgctgtttaaggtgactggc 221

                           
Query: 305 cttgtgagtgagctta 320
           ||||||||||||||||
Sbjct: 220 cttgtgagtgagctta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no174_g02.g1 MSMg01no174_g02.g1 CHROMAT_FILE:
MSMg01no174_g02.g1 PHD_FILE: MSMg01no174_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:14 2005
         (293 letters)



>mm_chr14_118621094_118621786
          Length = 693

 Score =  518 bits (268), Expect = e-151
 Identities = 286/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaactcccaaaggcattccaaagcacactccaaaggtcacatgaaaggccccccgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||
Sbjct: 201 agctaactcccaaaggcattccaaagcacactccaaaggtcacatgaaaggtcagccgag 260

                                                                       
Query: 61  ctcaacccttgacttcaacttttgagactaagcagatggcacaaccgcaccataactcct 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ctcaacccttgacttcaacttttgagactaagcagagggcacaaccgcaccataactcct 320

                                                                       
Query: 121 atttgaaacctatagctctgagagctcaaatgggtaccattcaagccactgcatttgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgaaacctatagctctgagagctcaaatgggtaccattcaagccactgcatttgaaa 380

                                                                       
Query: 181 tattaattagtaacaggactaacaaaaccaccaagaaagcatagacagagagaaggagat 240
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tattaattagtaacagggctaacaaaaccaccaagaaagcatagacagagcgaaggagat 440

                                                               
Query: 241 gctaaagaactgagtcctggccaagtattaaagctcacagaaagaggaggta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctaaagaactgagtcctggccaagtattaaagctcacagaaagaggaggta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)