BAC Information

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BAC

Clone NameMSMg01-175B01
Chromosome14 (Build37)
Map Location 65,356,794 - 65,357,074
singlet/doubletsinglet
Overlap geneKif13b
Upstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneHmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175B01.T7 (MSMg01no175_b01.b1)MSMg01-175B01.TJ (MSMg01no175_b01.g1)
ACCAG370174AG370175
length731732
length of high quality
(start - end)
294 (73 - 366)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no175_b01.b1 PHD_FILE: MSMg01no175_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:04 2005CHROMAT_FILE: MSMg01no175_b01.g1 PHD_FILE: MSMg01no175_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGACCGCGGA
ATTCTTCTCCTTTCTCTATAACTATTTTTCTTAGATTTGGTCTTTTCATA
GTGTCCCAGATTTCCTGGATGTCTCCGTGTCGGGAATTTTTCAGACTTAA
CATTTTTATTGTCCAGTATATGTATTTCATCTATCATATCTTCAGTGCCT
AAGATTTGGGCCTCCACTTCTTTTGCTTCTGTAGTTCCTGTTCACTTACT
AGATTTTTCATTGCCAGAATTCCCTCAATTTGTGTTTTCGTTATTCTGTT
TCCATTTTCAGGAACTGTTTTGTTTTCTTCAAGTGTTCTCCCCACCCTGC
TTGGCCTTCTTCCTCCATTTTTTTCCCGCCTGTCTTTTCCTGGATTTTTA
AAGGAGTTTCTTCACCCCCTCTTTGAGGACTTCTATCTTCCTCATAACCT
TGGTTTTAAAGTCCTCTCTTGTGCTTCAGCTGTGTTGGGATACTCAGAGC
TCACTACGCAGGATCCTTGGGCTATGGTGCCAGGTACTTACTGGCTGTTG
CGGATTGTGTTATGAACAATGCCTCCAGGCATTGGGTTTGAGGAGGAGAT
TATAGGTCCCTGGTCTGGTTTCTGATATTGTCTCCACTGGATGGTATTTT
GTTCCTTGGTTTGGTTCCCTCTGGCCTGACGCCCAGTGCGTCCTGTGTGG
CCTGAGGCTGATCATGCGTCTTCTGCTTATT
TCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTACAGTGGCCCTGCCGT
GACAAGGACACTTTCTCCTCGCTCCTTCCCAACCCCTGGCTCTTTCAATC
TTTCCGTCTCTACTTCCTTGATGGACCCTGATCTCATCGGGGAGGGGTTA
GAAATAGATGTCCATTTTTGCCAAGCCCTAATATTTAACTTTTAAACTTA
TTTTCATGTTTTAAATGTACACTGTTGTGGAGCTGGCCAGTGACTCTGCT
GGCCATGACCTGAGAGGAGGCATTAAACTCTGTGTAATTCATGGTGGCAC
AGGAAGGAACGTGAGTGTTATAAGATGCGAACGAGAAGACGGGGCAGCTT
GAAAAGCCTTGTGAGCTTTATAGAGGTGACCTCCACTCTGGCAAACTGGA
GCTGTTTTATACATTTTGGAAAGAAGAGAAAAATGTGATCATCTTTACGT
TTCTCAAGAATACTTTATTTATAGGGTAACATTGGAAGGATAAAAGATAT
GAATGGTCTTCTGAGGGCTGTCAGATCCCTCTGTGTCTTTGCTCGCCTTC
TGTGCCTGGGGAATCACCAACTTCCCCTGGCGGCGGTTTGGCCGGACTGT
CTACAAACCAGCTTGGAATAACCCTGGGGAATATCTTCTTTTCAGACTTT
CTTGAAAATCAAAGTCTGGGGGAATGAACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_b01.g1 MSMg01no175_b01.g1 CHROMAT_FILE:
MSMg01no175_b01.g1 PHD_FILE: MSMg01no175_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:04 2005
         (284 letters)



>mm_chr14_65356594_65357277
          Length = 684

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactacagtggccctgccgtgacaaggacactttctcctcgctccttcccaacccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggactacagtggccctgccgtgacaaggacactttctcctcgctccttcccaacccctg 260

                                                                       
Query: 61  gctctttcaatctttccgtctctacttccttgatggaccctgatctcatcggggaggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctctttcaatctttccgtctctacttccttgatggaccctgatctcatcggggaggggt 320

                                                                       
Query: 121 tagaaatagatgtccatttttgccaagccctaatatttaacttttaaacttattttcatg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tagaaatagatgtccatttttgccaagccctaatttttaacttttaaacttattttcatg 380

                                                                       
Query: 181 ttttaaatgtacactgttgtggagctggccagtgactctgctggccatgacctgagagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttaaatgtacactgttgtggagctggccagtgactctgctggccatgacctgagagga 440

                                                    
Query: 241 ggcattaaactctgtgtaattcatggtggcacaggaaggaa 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcattaaactctgtgtaattcatggtggcacaggaaggaa 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)