BAC Information

Click to search

BAC

Clone NameMSMg01-175L13
Chromosome14 (Build37)
Map Location 118,880,658 - 118,880,942
singlet/doubletsinglet
Overlap genenone
Upstream geneGpc6, 5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422
Downstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175L13.T7 (MSMg01no175_l13.b1)MSMg01-175L13.TJ (MSMg01no175_l13.g1)
ACCAG370628AG370629
length819748
length of high quality
(start - end)
77 (49 - 125)289 (69 - 357)
definitionCHROMAT_FILE: MSMg01no175_l13.b1 PHD_FILE: MSMg01no175_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:52 2005CHROMAT_FILE: MSMg01no175_l13.g1 PHD_FILE: MSMg01no175_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTCATAAACTTGATGTGCCAGGGTTGGGGCATGGGGGATGTT
GCGGGGTGGGGTGGGGCGGGGGAGGGATCCTCCCACAACAAAAGATTTGG
ACCCGTTTACTTTCTTACCTACTCCCCATATTCTTTACCCTCCTTTTTAA
TATCTATCCTCACCCGCCACCCCCACTTTTCATATTATTCACCCCCCCCC
GTATTACATTATATTCCTTACTTCATTTTTTTTCTTGGCTTTTTATACAC
CACCCCTTTTCCTTCCTTTATGCCTCTTTTTCTTTTCACACCCCCCTTCC
CTCACCAAGAGGGAAAAAATTTGAATAGATTCCCCAGAACAAAACCCCCT
TAATGAGGGGGTGTAAGTTTAAATTGTTTTTTAGTGTTAGCCCCCCCCTA
AAAAAAAAAAAAAACCAGGGGGGGGGTGGGGTTTTTCCTATACAATTACC
CCGTTCGCCGCCCCCCATCTCGCACTGCTAACTACTATTTTGTTATCTTT
CACCTCCGACCTGCTCCCTTTTTGTTTTATATTTCTCCGCCTGTTATTAT
ATATTACCCCCCCCTCTTGCCTCTATACGTGTAAAGATCCTATATTCTCT
TCTTCCGCCAACTCTATATTTTTTTTATTATAACCCCCCCGCCCGCACTT
TTATTTTCCGTCTCCCCCTCTTTTTTACCTCCCTCCCCGTCCTTTTTATT
TCGCCTCTCCCTATCCTATTTTCTTTTAATAAAGCTCCCACTTATAACTC
CCTCGCACTTTATATTTAT
CAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCAGCAGCAGTAGCAGGTGGCGGGACACAGCC
ATGAAAACACCTTTAACTCCACAAGTTTTGGCTTTTTGGGGATACAGACA
CATACGTGGCATACATACACATACGTGAGCACTAACACACCTAAAACAAA
GTTAGAAAGAAAACCACAAGACTCCCACATTTGCTCAGTGGGCCCAGTTC
CCTGTGTCAATACTGAATACTGTTCTTTAAAAGAGCCAGGATTAAGACAG
AGTCGATGGCTTCCAACACCTCCTCTGGAGGCCCTGATTAATCTCAGTGT
CCCACTTATTTTTGGTGGCCTTCTTCCCCAAGCCAGCGAGATAAATCTCA
ATGATCCATCCCCCCCCATAGAAAGGAACTGACGATTGTCACAGCCGCGT
TTGCTTGATTCAGAAGCTCATCATAGTTATTTGGGGGAGAGAATCACATG
GAAACCATTTTAAAATTAACTTTTAAAAGCAGATTACGTTGCTGACAACT
AATACTATCCCATGTGAGGCAGTGTGTATGTCCTGTTAGCATCATTTTAA
GAACCGCCCGCTTTAGGTCTACTTAACGTTTAGCAACGCAACAAACCGCC
CCCTCCCCATAACTACCGACTCAATTCAAATAATACCTCCATAACATCGC
TCAGTCACAACGCCCTTTACCAAGGAACTCATGTCCATTTACACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_l13.g1 MSMg01no175_l13.g1 CHROMAT_FILE:
MSMg01no175_l13.g1 PHD_FILE: MSMg01no175_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:52 2005
         (289 letters)



>mm_chr14_118880458_118881142
          Length = 685

 Score =  482 bits (249), Expect = e-140
 Identities = 278/289 (96%), Gaps = 4/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagcagcagtagcaggtggcgggacacagccatgaaaacacctttaactccacaagttt 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 485 tcagcagcagtagcaggtggtgggacacagccatgaaaacacctttaactctacaagttt 426

                                                                       
Query: 61  tggctttttggggatacagacacatacgtggcatacatacacatacgtgagcactaacac 120
           |||||| |||||||||||||||||||| ||||  ||||  | ||||||||||||||||||
Sbjct: 425 tggcttcttggggatacagacacatacatggc--acat--atatacgtgagcactaacac 370

                                                                       
Query: 121 acctaaaacaaagttagaaagaaaaccacaagactcccacatttgctcagtgggcccagt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 369 acctaaaacaaagttagaaagaaaaccacaagattcccacatttgctcagtgggcccagt 310

                                                                       
Query: 181 tccctgtgtcaatactgaatactgttctttaaaagagccaggattaagacagagtcgatg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 309 tccctgtgtcaatactgaatactgttctttaaaagagccaggatcaagacagagtcgatg 250

                                                            
Query: 241 gcttccaacacctcctctggaggccctgattaatctcagtgtcccactt 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcttccaacacctcctctggaggccctgattaatctcagtgtcccactt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 685
Length adjustment: 9
Effective length of query: 280
Effective length of database: 676
Effective search space:   189280
Effective search space used:   189280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)