BAC Information

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BAC

Clone NameMSMg01-175O23
Chromosome14 (Build37)
Map Location 55,216,717 - 55,217,353
singlet/doubletsinglet
Overlap gene4931414P19Rik
Upstream geneLOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub
Downstream genePsmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175O23.T7 (MSMg01no175_o23.b1)MSMg01-175O23.TJ (MSMg01no175_o23.g1)
ACCAG370780AG370781
length721717
length of high quality
(start - end)
670 (46 - 715)639 (79 - 717)
definitionCHROMAT_FILE: MSMg01no175_o23.b1 PHD_FILE: MSMg01no175_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:07 2005CHROMAT_FILE: MSMg01no175_o23.g1 PHD_FILE: MSMg01no175_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAGATCCGCGG
AATTCAAGACCACTTACCCCCTTCCCCCTTCAAAAAGGACTTTCCAAACT
GTACTAGCAGGCAAAGTGCAGAGCCAGATAAGGAAGCTGCCTGACTAAAC
AAATGTAAAAACATAGTTTTAGCGGTCAAAATGATTAAACCTGCAGCTAC
CAAAATAATATTAGCTGTTCTCAAAAAAATAGCCATAACAAGATTAGCAA
TTCTCCTGCCCCCCGCCCCACACTGAATTCTGACAAAGACCACACACCAC
CCTGACCTTGTTGGGAGAATTCCCCTGACGTTAATAGCTGTGACGTTAAT
GTACTATTACTTTGCTGTCCAAATCATAATAACCCACCATGGGGGCAGGC
AAAGTGAGTCACTAGGCCAAACGCCTACTTAGTCACTATACAAACCAACC
AATGACACCAATGAGAACCCTGTTGCTCAAATCTGCCCCTTACAAAGGTA
TAGAAAGTGTGTTCTTTCTTTGTTCTTGGTCTCTTCTCTGGCCTGTGTGC
TGAGAGGAGAGTCCCCAACATGTTGGATCAATAAAAATCCTCATGCGTTT
TGCAGCGATGGCAGCGGTCTCTGTGGTCCTTGTGATAAGGGTCTTTTGAC
GAACTACAACATTTGGTGCTTGGCTGGGAAGACCCTCTTCAGTGGGACAC
AGAAACCGTACATCGGAGGCA
CCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTCTTTTTTAATCAGCCT
GCTCACTTTAAGTTTATTAGTTCTAATTTTCCTTCTTATTATTTTCTTCT
GTGAGTATGGGTGTTTTGCCTGCGTGTAGGTCTGTGTCTTGGGAGGGTCT
GGACCTGGAGTTACAGAAGGTGGTGAGCCTCCCTGTGGGTGCTAGGAATC
AAGCCTGGGTCCTCTGCAAGAACAGCAAGTGTTTTAGCCAGCGAGCCACT
GCCACAGCACGCTTTTGTTTCTAAGACTGGGTCTTGCTATGGAGCCATGG
ATGTCCTGAATTCACTTGCCCAGCTCGGGCATCAGCTCATCCTAGCCTTT
GAGTCCTGGGATTATAGGTCACCCCACCAAGTGCCACTTAAGAAACAAGA
ACTATGCTAGCAGTGCCTCTGAGATACTAAAACACAGACTGACAGTGCAT
TTTAATTATATTTAGTTACTAAATAGGCCATGTCTAGGCCAGATGTGGTG
AAGCAGGCAGATCTCTGTGAGTTCTAGGCCAGCCTGGCCTATATAGTGAG
TTAGTTCCAGGACATCCGGGGCTATGTAATGAGACCCTGTCTTAAACAAA
CAAAATAATAATTAAAAAGTTTTAAGTTTGTTCTTTCTCCCTTTATATTG
AAAAAGTAGCTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_o23.g1 MSMg01no175_o23.g1 CHROMAT_FILE:
MSMg01no175_o23.g1 PHD_FILE: MSMg01no175_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:07 2005
         (639 letters)



>mm_chr14_55216517_55217555
          Length = 1039

 Score = 1187 bits (614), Expect = 0.0
 Identities = 632/640 (98%), Gaps = 5/640 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggttcttttttaatcagcctgctcactttaagtttattagttctaattttccttctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggttcttttttaatcagcctgctcactttaagtttattagttctaattttccttctta 260

                                                                       
Query: 61  ttattttcttctgtgagtatgggtgttttgcctgcgtgtaggtctgtgtcttgggagggt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattttcttctgtgtgtatgggtgttttgcctgcgtgtaggtctgtgtcttgggagggt 320

                                                                       
Query: 121 ctggacctggagttacagaaggtggtgagcctccctgtgggtgctaggaatcaagcctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacctggagttacagaaggtggtgagcctccctgtgggtgctaggaatcaagcctgg 380

                                                                       
Query: 181 gtcctctgcaagaacagcaagtgttttagccagcgagccactgccacagcacgcttttgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcctctgcaagaacagcaagtgttttagccagcgagccactgccacagcacgcttttgt 440

                                                                       
Query: 241 ttctaagactgggtcttgctatggagccatggatgtcctgaattcacttgcccagctcgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaagactgggtcttgctatggagccatggatgtcctgaattcacttgcccagctcgg 500

                                                                       
Query: 301 gcatcagctcatcctagcctttgagtcctgggattataggtca--ccccaccaagtgcca 358
           |||||||||||||||||||||||||||||||||||||||||||  |   | |||||||||
Sbjct: 501 gcatcagctcatcctagcctttgagtcctgggattataggtcaggc---agcaagtgcca 557

                                                                       
Query: 359 cttaagaaacaagaactatgctagcagtgcctctgagatactaaaacacagactgacagt 418
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttaagaaacaagaactatgctggcagtgcctctgagatactaaaacacagactgacagt 617

                                                                       
Query: 419 gcattttaattatatttagttactaaataggccatgtctaggccagatgtggtgaagcag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gcattttaattatatttagttactaaataggccatgtctaggccagatgtggtgaagcag 677

                                                                       
Query: 479 gcagatctctgtgagttctaggccagcctggcctatatagtgagttagttccaggacatc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gcagatctctgtgagttctaggccagcctggcctatatagtgagttagttccaggacatc 737

                                                                       
Query: 539 cggggctatgtaatgagaccctgtcttaaacaaacaaaataataattaaaaagttttaag 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cggggctatgtaatgagaccctgtcttaaacaaacaaaataataattaaaaagttttaag 797

                                                   
Query: 599 tttgttctttctccctttatattgaaaaagtagctttcct 638
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tttgttctttctccctttatattgaaaaagtagctttcct 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)