BAC Information

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BAC

Clone NameMSMg01-176D07
Chromosome14 (Build37)
Map Location 45,485,226 - 45,606,627
singlet/doubletdoublet
Overlap genenone
Upstream geneAng-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr
Downstream genePtger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1, EG637379, LOC666834, LOC100041685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176D07.T7 (MSMg01no176_d07.b1)MSMg01-176D07.TJ (MSMg01no176_d07.g1)
ACCAG370969AG370970
length1,2731,272
length of high quality
(start - end)		741 (94 - 834)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no176_d07.b1 PHD_FILE: MSMg01no176_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:40 2005CHROMAT_FILE: MSMg01no176_d07.g1 PHD_FILE: MSMg01no176_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(45,605,935 - 45,606,627)(45,485,226 - 45,485,605)
sequence
NCCGTTCTNNNNNNNNGCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCTGGTGCAGGGAAGTTCGTATAAGGCACGGTGGCTTT
GGGGCTCCGTGAGTGATCCCTATTTAAAGGTGAATTTGTCACAAGAAAAA
GACCAGAGCTAGTTGTATAATTCTTAGGAGTTCATATCTTAGTAATTACT
TTTCTGGGCTTCGTGATTTCATTTGCAACATATTCAAATTAGCATTTTTG
TTTGTGTGTGTGTTTGTTTCCAGTAGTTGCACAGAGAGAGCTAGAAGTCC
TACTGTGTTCCATGTTTCAGCAGTCTCACTAGATGCTTAGTTTGCCATTT
CTACCTACTCAGACCATCAGGTCGGTTCAGTAAATTGAATTCTCATCTGT
AGTTTGAAAGTGTTTTCTTCCCATTTCTAATTGTAGTGTCAGCATCCCAG
TACAAGTTCAGTTTATCCAGAGTCTAGGATTTCTTAATAGAAAAATATAT
TAACACCCTCAGTTTTAGAATTGGGACATACAGCTTTGCTAATTTTCAGT
TCCTGTTCATGAAGCCATTGTGTTTGGGGAACACCATGTGATTAGTAATT
GTGTGTCAACTTGGTCAGGCATGGGATGCCCAGGAGCTGACTAAACAGTA
TGTCTGACTATATCTGGGAGGTGTTCTAAAGAACTTAGCATCCACATTGC
TGGACTGACTAAGGCACATAACTGCTCCACTGTGGGTGGGCCCCATCTGG
TCTGTTGCTGACTGAATAGCACTAGGAATATAGGTGAAGGTTGATACCCA
GCTTCATTTGGGGCATTGATCCGCCATTGACATTCCTGATTCTCTGGCTT
TCAGGCTGACTAGAATCTCACCTGTTAGCTCTTCAGTTTTGAGACTTCTT
CCAAACATAACACTGGCTTTATAAGTAGATACCCTTAGAGAGCCTCAGGT
AAATCAAGGGCTTGGAATATAACTGAAAAAGCTGTTGGCTAGGCGTTTTT
GTATTTGAGTATGAATTCCTTTATTGGCCAAAACCTTGGGGATCATAATG
TCTTTTGTTTCCCGAACCCCTCTTATGTGAATAAACCTTTCCCCTTGGGC
CCTTTTCTTTTGAGGGGTGCTGAACTATAACTAATTCTTTGGAAATATAC
AATCTCTAATTTCTCTTTCGAACCTTGATCCTATTGGGCTTCCTTTAGGG
TAGACTCTTTTCTTATAGGTTTTCTTATTGAGCCGCGCACGTCTTATCTA
ATTGTACGATAACTATCTTGTCN

NNNNTTCGATTGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACTCATAGGAGAGTTGTTGGTCTACACAG
CAAGACTCTGTGATCTTTGTCTTAAAAACCTCATCTGTACCTGTTTTTGG
TTTTGGTAGAGCATTGTGATGAACAACAATCAACATGACTACAATTTTGT
AAGTTTGTCCATCGTTGCGGATTTGAAAACACAGCTGAGCTAACCTGTTC
TTTTATCTCAGTCTCTAGTTCTCAGGCTTCACTTTCACAGCTGCAGAAGC
TCATGGGTGCCGGTGATTGGGAAATCGCTTGGGACTGTAGCCCAGTGCAA
ATTACCTTGTGAGTTATGACAACAATGAGAACGGGAAATGTTGACTCATA
TATCTGTTATGGCACGGTGAGGAAGAAACACTGATCTGTAGCATAAGGGA
TCTTATTTTCCCCCCCCCGGAAAGCTTTGCCTGCTGATCTAGAAGGGGCA
GAGCTAGGTAGCTGAGTAACTAAGCCTCACAGCAGAGGCTGCCTTGTCAT
TCACTAGACCAGTGTCCTCATCTTAGGCAGGCACAAAAACTATACTTTCT
GGTCTCTTGTGTCATTGTATACATGTCATTGTATAGCTGAGTTCTAGCCT
CCCCCCTGCTGTCTAGTCTCTGTTCCTTTTCTCTGTTATGTCTGAAAAAA
AAGGCCATGGGAGGCCCTAGAAATGAATGAACCCTGGGCCTCAGAAGGAC
AATGTGGGATGCTTACTGCCAACTGAGGAATATATATTTGGGTCATACAT
AAATCAAAACAACAACAAATAACCCTGTTCTATCATGCTGATGACACTTT
ACACTTTACCTTATAGCATGATGGGGTTTGTTGGGGTTAGTCCGAACGTG
ATTTTGTCAACTTTTATTTCTTCTGCAAGAAAAGCTGAAAAAACTTAGCC
CTTTAATTAACCACGTATCCCCTTGATCTAAACTTATTATTGTTCTGCGT
AAATAAAAAAAATGCCATCGTTTTGTTTTTGTAATATTATTTCCCCTTTC
GAAAGTCTTTTCTTTCTTTTTACTAATCTGTTAAATCTAAACCTCATCTT
CTTCAATTTTTCTCTCATAAACTCCTGTCTCTATTTTATTACCTCCATTA
TAGAATTCTTCTCTCTCATTCATTTTTCTTCATTCTCTTATATTTCCTTC
TTTTATCAACCATCATCCTACTCTTTCTTAATTCTCTCATTCTTTATTCT
TACTCTTCTTCTATCTATACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_d07.b1 MSMg01no176_d07.b1 CHROMAT_FILE:
MSMg01no176_d07.b1 PHD_FILE: MSMg01no176_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:40 2005
         (741 letters)



>mm_chr14_45605935_45607075
          Length = 1141

 Score = 1239 bits (641), Expect = 0.0
 Identities = 680/693 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctttggggctccgtgagtgatccctatttaaaggtgaatttgtcacaagaaaaagac 60
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 693 tggctttggggctccgtgagtgatccctacttaaaggtgaatatgtcacaagaaaaagac 634

                                                                       
Query: 61  cagagctagttgtataattcttaggagttcatatcttagtaattacttttctgggcttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cagagctagttgtataattcttaggagttcatatcttagtaattacttttctgggcttcg 574

                                                                       
Query: 121 tgatttcatttgcaacatattcaaattagcatttttgtttgtgtgtgtgtttgtttccag 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 573 tgatttcatttgcaacatattcaaattagcatttttgtttgtttgtgtgtttgtttccag 514

                                                                       
Query: 181 tagttgcacagagagagctagaagtcctactgtgttccatgtttcagcagtctcactaga 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 513 tagttgcacagagagagctagcagtcctactgtgttccatgtttcagcagtctcactgga 454

                                                                       
Query: 241 tgcttagtttgccatttctacctactcagaccatcaggtcggttcagtaaattgaattct 300
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 453 tgcttagtttgccatctctacctactcagaccatcaggtcggttcagtaaattgaattat 394

                                                                       
Query: 301 catctgtagtttgaaagtgttttcttcccatttctaattgtagtgtcagcatcccagtac 360
           | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cttctgtagtttgaaagtggcttcttcccatttctaattgtagtgtcagcatcccagtac 334

                                                                       
Query: 361 aagttcagtttatccagagtctaggatttcttaatagaaaaatatattaacaccctcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aagttcagtttatccagagtctaggatttcttaatagaaaaatatattaacaccctcagt 274

                                                                       
Query: 421 tttagaattgggacatacagctttgctaattttcagttcctgttcatgaagccattgtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttagaattgggacatacagctttgctaattttcagttcctgttcatgaagccattgtgt 214

                                                                       
Query: 481 ttggggaacaccatgtgattagtaattgtgtgtcaacttggtcaggcatgggatgcccag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttggggaacaccatgtgattagtaattgtgtgtcaacttggtcaggcatgggatgcccag 154

                                                                       
Query: 541 gagctgactaaacagtatgtctgactatatctgggaggtgttctaaagaacttagcatcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 gagctgactaaacagtatgtctgactatatctgggaggtgttctaaagaacttagcatcc 94

                                                                       
Query: 601 acattgctggactgactaaggcacataactgctccactgtgggtgggccccatctggtct 660
           ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 93  acattgctggactgactaaggcacataacagctccattgtgggtgggccccatctggtct 34

                                            
Query: 661 gttgctgactgaatagcactaggaatataggtg 693
           |||||||| ||||||||||||||||||||||||
Sbjct: 33  gttgctgagtgaatagcactaggaatataggtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 741
Length of database: 1141
Length adjustment: 10
Effective length of query: 731
Effective length of database: 1131
Effective search space:   826761
Effective search space used:   826761
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no176_d07.g1 MSMg01no176_d07.g1 CHROMAT_FILE:
MSMg01no176_d07.g1 PHD_FILE: MSMg01no176_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:40 2005
         (381 letters)



>mm_chr14_45485026_45485806
          Length = 781

 Score =  735 bits (380), Expect = 0.0
 Identities = 380/380 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcataggagagttgttggtctacacagcaagactctgtgatctttgtcttaaaaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactcataggagagttgttggtctacacagcaagactctgtgatctttgtcttaaaaacc 260

                                                                       
Query: 61  tcatctgtacctgtttttggttttggtagagcattgtgatgaacaacaatcaacatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctgtacctgtttttggttttggtagagcattgtgatgaacaacaatcaacatgact 320

                                                                       
Query: 121 acaattttgtaagtttgtccatcgttgcggatttgaaaacacagctgagctaacctgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaattttgtaagtttgtccatcgttgcggatttgaaaacacagctgagctaacctgttc 380

                                                                       
Query: 181 ttttatctcagtctctagttctcaggcttcactttcacagctgcagaagctcatgggtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttatctcagtctctagttctcaggcttcactttcacagctgcagaagctcatgggtgc 440

                                                                       
Query: 241 cggtgattgggaaatcgcttgggactgtagcccagtgcaaattaccttgtgagttatgac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggtgattgggaaatcgcttgggactgtagcccagtgcaaattaccttgtgagttatgac 500

                                                                       
Query: 301 aacaatgagaacgggaaatgttgactcatatatctgttatggcacggtgaggaagaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaatgagaacgggaaatgttgactcatatatctgttatggcacggtgaggaagaaaca 560

                               
Query: 361 ctgatctgtagcataaggga 380
           ||||||||||||||||||||
Sbjct: 561 ctgatctgtagcataaggga 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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