BAC Information

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BAC

Clone NameMSMg01-177D21
Chromosome14 (Build37)
Map Location 35,634,156 - 35,634,650
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneGdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163, Gprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231, 2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177D21.T7 (MSMg01no177_d21.b1)MSMg01-177D21.TJ (MSMg01no177_d21.g1)
ACCAG371685AG371686
length710704
length of high quality
(start - end)
357 (45 - 401)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no177_d21.b1 PHD_FILE: MSMg01no177_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:46 2005CHROMAT_FILE: MSMg01no177_d21.g1 PHD_FILE: MSMg01no177_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTATACCAGGCTGGCCTTGAACTCAGAACTCCACCTACCTC
TGCCTCCCAAGTGCTGGAATTAAAGACGTGCGCCACCACGCCCAGCTGAT
GTCATTTTTTTAAAGGGCCAAGTAATACTTAATCAAGTAAAATAAATAAA
TAAAAAGAAAAAAAGAAGAAAAGAAAAAAAAAGAAAAAAAGAATGAATAC
CTAATCAAGTAAATGTACCACATTTTCTTTATCCATTCTTCTGTTGAGGA
ACATCTAGGCTGTTTCCAGTTTCTGGCTATTATGAATAAAGCCAAAAAAA
CCATAGTTGAGCAAATGTCTTTGGGGGTAGGATGGAGTGTCCTTTGAGTA
TATGCCCGAAAATGGAACACCAGGGTGTAAAAATTGGGGGGGAAAAAAAA
GGAAAAAGAAAAAGGCGAAAAATGACAAACATGAAACGCAACGGGAAAAA
AAATGAAAAAAAAAGGGTGAAAGGGGAGGGAAAAGGGGGAAAGGAAAAAA
AGGAAATGGGGAAAAGTGGAATAGTGGAAAAGGTGAAAAAAGGGGAAAAG
GGAAAAAGAAAAATGAAGGGGGAAAAAGGGGGAAAAAAAGGGGAAAGGGG
AAAAGGGGAAAAAAAAAGGGGAAAAAGGGACAAGAAAAAAGGGCAAAAAA
GGGAAAAAAA
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCACTATACTGGAGCCGCAATGCTG
ACCGCGAGACCCACTCTGGCTCCTGGGCGGGAAGCACGTTTGGATCCTGG
CCCGGCACCGGCACCAGAGGGGAGGCCGCAGCCCTTGGAGTAGAGACTCT
GTCCCTGTCATCCCCTCCACCTTCTGCTCCGCGGGTAACATCAACCACGT
TTCCTCACACCTCCCAACCCCCAGTTTATCCGTGTTAGCTGGTCTTTCCC
AACTTCCGGAAAGGCGACTGCAGAGGGGCTCCCCCATAAGCGACCGCTGT
TAGTCCCCCAACCGGGCCCAACTTCTCGAGATCCCAGCCATTCTGCTCCA
AACTCCTGATCACCACCCCTCCTCCGGACTCCCCTTCCTCTGCTTTTCCT
CTTCTTCCTCTCCATGCAGCGCCCCCCACCCCACTATCCATGCTCCTTCC
GTTCACCCCTACCATCCACACTGTACGCTGGCCCCGAGACTTATATCAGG
CACAAACTCTAGGACTGTCCAGGATAGAGGTGCGGTTGCCAAAGGCTGAT
ACTCACTCACGGACACTCACGGANTTACCATGGGTTTCACCGACACTTAC
CCGATAACGGCCAAACACCGTGTCCACTCTTTCATGATGACTGATCGCGA
CCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_d21.g1 MSMg01no177_d21.g1 CHROMAT_FILE:
MSMg01no177_d21.g1 PHD_FILE: MSMg01no177_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:46 2005
         (495 letters)



>mm_chr14_35633956_35634850
          Length = 895

 Score =  903 bits (467), Expect = 0.0
 Identities = 488/495 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcactatactggagccgcaatgctgaccgcgagacccactctggctcctgggcgggaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctcactatactggagccgcaatgctgaccgcgagacccactctggctcctgggcgggaag 636

                                                                       
Query: 61  cacgtttggatcctggcccggcaccggcaccagaggggaggccgcagcccttggagtaga 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cacgtttggatcttggcccggcaccggcaccagaggggaggccgcagcccttggagtaga 576

                                                                       
Query: 121 gactctgtccctgtcatcccctccaccttctgctccgcgggtaacatcaaccacgtttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 575 gactctgtccctgtcatcccctccaccttctgctccgcgggtaacatcagccacgtttcc 516

                                                                       
Query: 181 tcacacctcccaacccccagtttatccgtgttagctggtctttcccaacttccggaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcacacctcccaacccccagtttatccgtgttagctggtctttcccaacttccggaaagg 456

                                                                       
Query: 241 cgactgcagaggggctcccccataagcgaccgctgttagtcccccaaccgggcccaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cgactgcagaggggctcccccataagcgaccgctgttagtcccccaaccgggcccaactt 396

                                                                       
Query: 301 ctcgagatcccagccattctgctccaaactcctgatcaccacccctcctccggactcccc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 395 ctcgagatcccagccattctgctccaaactcctgatcactacccctcctccggtctcccc 336

                                                                       
Query: 361 ttcctctgcttttcctcttcttcctctccatgcagcgccccccaccccactatccatgct 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 335 ttcctctgcttttcctcttcttcctctccatccagcgccccccaccccactatccatgct 276

                                                                       
Query: 421 ccttccgttcacccctaccatccacactgtacgctggccccgagacttatatcaggcaca 480
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 275 ccttccgttcacccctaccatccacactgtacgctggccccaagacttatatcaggcaga 216

                          
Query: 481 aactctaggactgtc 495
           |||||||||||||||
Sbjct: 215 aactctaggactgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)