BAC Information

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BAC

Clone NameMSMg01-177I09
Chromosome14 (Build37)
Map Location 8,925,205 - 8,925,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976, Flnb, Dnase1l3, Abhd6, Rpp14
Downstream genePxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177I09.T7 (MSMg01no177_i09.b1)MSMg01-177I09.TJ (MSMg01no177_i09.g1)
ACCAG371889AG371890
length730712
length of high quality
(start - end)
70 (70 - 139)547 (75 - 621)
definitionCHROMAT_FILE: MSMg01no177_i09.b1 PHD_FILE: MSMg01no177_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:06 2005CHROMAT_FILE: MSMg01no177_i09.g1 PHD_FILE: MSMg01no177_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGTTTCAGGAACATGGAAAAAGAGAAAAAGACTCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCTGG
GTCGCTCGCGCACACAAGAGACAGAGAGAGAGAGAGAGAGAGGGTGTTAA
AAGAAAATGAAAATTAATGTAAAGGTGAGTGAGAGGTGGGAAGAGTGAGA
GAGTAGGATAGATTGAGATTGTAGCACTGGCATGGCATCTGTCGGGACTC
GTGGGAAGTGTATTTTATTGTCTATAGAGAAAACAGTAGGAGTATAGGAA
AAACTGCGGCACAAGATGAGTAGAGCGAGTAAGGAGGAATTTTAAAGAGA
GGTAGGTTGCCCACAGCTCCAGTAATGTAAGGAATTTAAGAGGAAAGAAG
AGTGATTATAAATAGGAATTGGGCTCTGGGCTTAGGAAGCCTGGAATTGA
AAACGAAGTTCTAGGGGGGTGAATACGAGGAAGAACGAGTTTGTTCCGTA
GTGGAGACCGATTTTTTGTTCTGGAAGAAGGAAGATAAATTTTGATTCTA
AAAGGCAAAAGGTGCAGGCGCAGGTTGAGATATAGGAGAGGGGGCGGAAA
AGAAATGATATATATACTCAGTTCGGAGAGGAATATATGGATAGGTGGGA
TGTAAAGTGTGAGGGAGGAGATGGCCGAGN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGTCACTAGAGGGCAGTCATGTGTC
TAAAATGAGTTATAAACTTATTGTACCTTCTTCCAGTATGTGAAGGGGTG
AAGAAACCCCCCAAATCAATGCCAAGAGCAAAGGTACTATAGTAAGTCTC
AGAATGGGCAGCATTGCAGGCTGAGGTCAGCTAACAATGACTTGGTTGTA
GGCAAGTCACTAGACTCAGGCCTTCAGTGCACACTCCTGCAGAACGCACC
TTTCAACTGGGAATTTGCTTTAAGATCCATAAATGGAGTATGATATGATT
AATCGTAGTAGCCACCAGGCTTTTACATTTCTGATAGGCTAATTTTAATT
CTTGAAACAGCTCTATAAAGTTACTAGCCCTGTGTTATTGACAGAAGCAG
ATGGAGTTACTAGCTTGTCTGAGGTCATCCAGGATCATCCAGGATACAGG
CTTGAGCTCTCTTTTTCTCATCACTGGATCTTACAGTGTTCTCATTCCTG
GAGTACTTTCCATTTCAATAGTATTTTGTTAAAATAAAATTCTTAAATCC
ATTCAGATTGATATTCCCTGCTATAGTTGGAGCATTTCCCTATTTTATAC
CTATGGCTTCCACCCCAAATCTGCCTCTCACCCTTTACCCCAATGATGGG
CATGCCTCATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_i09.g1 MSMg01no177_i09.g1 CHROMAT_FILE:
MSMg01no177_i09.g1 PHD_FILE: MSMg01no177_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:06 2005
         (547 letters)



>mm_chr14_8925005_8925951
          Length = 947

 Score =  982 bits (508), Expect = 0.0
 Identities = 538/548 (98%), Gaps = 2/548 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtcactagagggcagtcatgtgtctaaaatgagttataaacttattgtaccttcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtcactagagggcagtcatgtgtctaaaatgagttataaacttattgtaccttcttcc 260

                                                                       
Query: 61  agtatgtgaaggggtgaagaaaccccccaaatcaatgccaagagcaaaggtactatagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtatgtgaaggggtgaagaaaccccccaaatcaatgccaagagcaaaggtactatagta 320

                                                                       
Query: 121 agtctcagaatgggcagcattgcaggctgaggtcagctaacaatgacttggttgtaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctcagaatgggcagcattgcaggctgaggtcagctaacaatgacttggttgtaggca 380

                                                                       
Query: 181 agtcactagactcaggccttcagtgcacactcctgcagaacgcacctttcaactgggaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcactagactcaggccttcagtgcacactcctgcagaacgcacctttcaactgggaat 440

                                                                       
Query: 241 ttgctttaagatccataaatggagtatgatatgattaatcgtagtagccaccaggctttt 300
           ||||   |||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 441 ttgcagcaagacccataaatggagcatgatatgattaatcgtagtagccaccaggttttt 500

                                                                       
Query: 301 acatttctgataggctaattttaattcttgaaacagctctataaagttactagc-cctgt 359
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct: 501 acatttctgataggctaattttaattcttgaaacagctttataaagttactagctcc-gt 559

                                                                       
Query: 360 gttattgacagaagcagatggagttactagcttgtctgaggtcatccaggatcatccagg 419
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 gttattgacagaagcagatggagttactagcttgtctgaggtcattcaggatcatccagg 619

                                                                       
Query: 420 atacaggcttgagctctctttttctcatcactggatcttacagtgttctcattcctggag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atacaggcttgagctctctttttctcatcactggatcttacagtgttctcattcctggag 679

                                                                       
Query: 480 tactttccatttcaatagtattttgttaaaataaaattcttaaatccattcagattgata 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tactttccatttcaatagtattttgttaaaataaaattcttaaatccattcagattgata 739

                   
Query: 540 ttccctgc 547
           ||||||||
Sbjct: 740 ttccctgc 747


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)