BAC Information

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BAC

Clone NameMSMg01-177M06
Chromosome14 (Build37)
Map Location 99,257,621 - 99,258,228
singlet/doubletsinglet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177M06.T7 (MSMg01no177_m06.b1)MSMg01-177M06.TJ (MSMg01no177_m06.g1)
ACCAG372056AG372057
length699713
length of high quality
(start - end)
614 (48 - 661)276 (81 - 356)
definitionCHROMAT_FILE: MSMg01no177_m06.b1 PHD_FILE: MSMg01no177_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:24 2005CHROMAT_FILE: MSMg01no177_m06.g1 PHD_FILE: MSMg01no177_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAGAGGATCC
GCGGAATTCTGGGATTCTTGTTAGCTCCCTGGCACTTTGTATTCTCACTG
AAATCTCCCGATTTGTAGACTTACTATTATAGAATTTCTGTGATCTGTAT
ACAACCATCTTGAAGCTTAGAACATGCCCACCTCTAGGCCTGTGGTCCAC
GTCCCTTCCCTATATTTCCATGCCTACATAGTAGCTGCAACGTTTACGCA
TGGCTCCAGTTTGGCTCAGGTCTTACTGAGAGCAGTCCCAAGGACAATTC
TAAGCAAATGCAAAGAGTTTCAGTCAGTTTCCCCATTGTCAACAGTGACA
GAGATGGTTGACAACAGTCATTCTTTCATGCAGAGTTTATCACATAACTT
AGACGGTCCATGAAGGGAAGTGATACAAACCCTGAGTGGCCACCCCTGTA
AAATGGGAAGAGGAGGGAAAAGTTGAAGAACTCCTAAAAGCTAGGCTTAC
ACCACACACTTCAAATGCTCCCATAAGCACTCAAAAACTCCATGTGTCTG
GGACGCCCTGCCATATCCAGGACACAGCTCTCTGCTGCCCATTTGCAGAA
TGAGAAAGTTGACACCATTACATTATTACATCATGCAGAGGACACTTGCT
ACTTACCCAAGGAAGTCTCGCCCTGGTGATGGTCACGAGCCAGCTGCCA
NTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGGAAAATATTTCACAG
AAGATGTTTGTTTATGCTCACCAAACACTTTAATTTTTTATTATATTCTT
ATAAGACTTTATATTAGGGGATAATATTTGGTTCCCCGAGTGAGTTTTGA
AACATTTTTTCTCTTAATATTTTGTGGATAAGTTTAAGAACTATTGGTAT
TAAATTATTTTCAAAGTTTAGTGAAATTGTTAATACATTTAGTTGAGCTT
TTCTCTGTTTAGAGATTATTTATTTTAAATTTTATTTTGCTTTTTGCCAA
CAGGCAAGACAGTTTTTTTTCCCCCCCCCCCCCATCGGATCACTGAAATT
TGATTTCTTCTTTTCGGCTTTTTAAAAAAAAAAAATTCTCTTCGGTGCGT
TCCCTTTTGTATTTGTAATAACGAATATTCATATTTATGGAACTCTTATT
TCCTTGGTTTATACCTTTCTTTTCCCCTTTCTTGGTGGACGTTCCCCCAA
TCTAAATCACTGTTTTTATGGCCCTCTCCTTCTTGATAAAACTGTACTTT
CTCCTTCTTTTTTTTTATTTTTTTTGAGGGCGTCTTTTCCCTCACTCCGT
CGCACCACGCTTCCGCTCTATAATTAGGCCTTTGTATTCTTTTGTCTCCC
TCCCCCACGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_m06.b1 MSMg01no177_m06.b1 CHROMAT_FILE:
MSMg01no177_m06.b1 PHD_FILE: MSMg01no177_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:24 2005
         (614 letters)



>mm_chr14_99257415_99258428
          Length = 1014

 Score = 1145 bits (592), Expect = 0.0
 Identities = 604/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgggattcttgttagctccctggcactttgtattctcactgaaatctcccgatt 66
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgggaatcctgttagctccctggcactttgtattctcactgaaatctcccgatt 266

                                                                       
Query: 67  tgtagacttactattatagaatttctgtgatctgtatacaaccatcttgaagcttagaac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtagacttactattatagaatttctgtgatctgtatacaaccatcttgaagcttagaac 326

                                                                       
Query: 127 atgcccacctctaggcctgtggtccacgtcccttccctatatttccatgcctacatagta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgcccacctctaggcctgtggtccacgtcccttccctatatttccatgcctacatagta 386

                                                                       
Query: 187 gctgcaacgtttacgcatggctccagtttggctcaggtcttactgagagcagtcccaagg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctgcaacgtttacgcatggctccagtttggctcaggtcttactgagagcagtcccaagg 446

                                                                       
Query: 247 acaattctaagcaaatgcaaagagtttcagtcagtttccccattgtcaacagtgacagag 306
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 447 acaattctaagcaaatgcaaagagtttcagccagtttccccattgtcaacagtgacagag 506

                                                                       
Query: 307 atggttgacaacagtcattctttcatgcagagtttatcacataacttagacggtccatga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atggttgacaacagtcattctttcatgcagagtttatcacataacttagacggtccatga 566

                                                                       
Query: 367 agggaagtgatacaaaccctgagtggccacccctgtaaaatgggaagaggagggaaaagt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agggaagtgatacaaaccctgagtggccacccctgtaaaatgggaagaggagggaaaagt 626

                                                                       
Query: 427 tgaagaactcctaaaagctaggcttacaccacacacttcaaatgctcccataagcactca 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tgaagaactcctaaaagctaggcttacaccacacacttcaaatgctcccataagcactca 686

                                                                       
Query: 487 aaaactccatgtgtctgggacgccctgccatatccaggacacagctctctgctgcccatt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaactccatgtgtctgggacgccctgccatatccaggacacagctctctgctgcccatt 746

                                                                       
Query: 547 tgcagaatgagaaagttgacaccattacattattacatcatgcagaggacacttgctact 606
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgcagaatgagaaacttgacaccattacattattacatcatgcagaggacacttgctact 806

                   
Query: 607 tacccaag 614
           ||||||||
Sbjct: 807 tacccaag 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)