BAC Information

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BAC

Clone NameMSMg01-177P08
Chromosome14 (Build37)
Map Location 69,854,884 - 69,855,417
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1
Downstream geneSlc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177P08.T7 (MSMg01no177_p08.b1)MSMg01-177P08.TJ (MSMg01no177_p08.g1)
ACCAG372193AG372194
length721720
length of high quality
(start - end)
661 (46 - 706)646 (75 - 720)
definitionCHROMAT_FILE: MSMg01no177_p08.b1 PHD_FILE: MSMg01no177_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:38 2005CHROMAT_FILE: MSMg01no177_p08.g1 PHD_FILE: MSMg01no177_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCAGCATATCCTGCTGAACTTGTATAGCATTCTAAACATGAATT
CCTTTCCCATTAAAATGTCCTCGAGTTATTCTGAGCTTGTTGGATGAGAG
CTGTTCCTTTAGCTCTGGGATGTTGCTCACTGAAATCGTGTTGGTCCTAA
TTTTCATGGAAACGTATGTAGTGTCATCTTTTTCACAGATGAGCATTCCA
TCCGAGTGTTTGTCATGAGTAAACCCACACAGATGTCAGTGGAAGAGATG
ATCCATTCTGCAGAGAAGAGTGGGGGCGGGGCTCAGAAATGTGTGCATTG
TACAGAGCAGATTAGAGGCATATTTGTTTTTTTTTCCTTTTAACTTTTTA
TTGATTCTTTGTGAGTTTCACATCATGCACTCATCCATGATTTTGTATAT
GTCCTCTGCCCTTGCAACCTACCCACAAAAGAAAATTAAGAAACAGAAAT
TAAAAACGATAAAAATCTTGTTGTGGAAGCTGTAGTGTGTCACAGTGTGT
CCCACAATGTACTCTCTTGTCCACACTTCTTCACTTGCAAATGTCCATTG
CAGTGAGTCACTGGTTCAAGGCCTCTGGCTTCTGCTACAGCATTAATACT
GGACGGATCCCTGTATTGATATAGGCACTCCTCTTAGATGTCCTGTTGTT
GCCCTGCGTCATGGAGATCTT
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAAGGCTGA
GAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAAGATACCGAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_p08.b1 MSMg01no177_p08.b1 CHROMAT_FILE:
MSMg01no177_p08.b1 PHD_FILE: MSMg01no177_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:38 2005
         (661 letters)



>mm_chr14_69854884_69855943
          Length = 1060

 Score =  988 bits (511), Expect = 0.0
 Identities = 529/535 (98%), Gaps = 2/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccagcatatcctgctgaacttgtatagcattctaaacatgaattcctttccca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gaattcaccagcatatcctgctgaacttgtatagcattctaaacatgaattcctttccca 475

                                                                       
Query: 65  ttaaaatgtcctcgagttattctgagcttgttggatgagagctgttcctttagctctggg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttaaaatgtcct-gagttattctgagcttgttggatgagagctgttcctttagctctggg 416

                                                                       
Query: 125 atgttgctcactgaaatcgtgttggtcctaattttcatggaaacgtatgtagtgtcatct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgttgctcactgaaatcgtgttggtcctaattttcatggaaacgtatgtagtgtcatct 356

                                                                       
Query: 185 ttttcacagatgagcattccatccgagtgtttgtcatgagtaaacccacacagatgtcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 355 ttttcacagatgagcattccatccgagtgtttgtcatgagtaaacccacacagatgtcat 296

                                                                       
Query: 245 tggaagagatgatccattctgcagagaagagtgggggcggggctcagaaatgtgtgcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tggaagagatgatccattctgcagagaagagtgggggcggggctcagaaatgtgtgcatt 236

                                                                       
Query: 305 gtacagagcagattagaggcatatttgttttttttt-ccttttaactttttattgattct 363
           ||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 235 gtacagagcagagcagaggcatatttgttttttttttccttttaactttttattgattct 176

                                                                       
Query: 364 ttgtgagtttcacatcatgcactcatccatgattttgtatatgtcctctgcccttgcaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttgtgagtttcacatcatgcactcatccatgattttgtatatgtcctctgcccttgcaac 116

                                                                       
Query: 424 ctacccacaaaagaaaattaagaaacagaaattaaaaacgataaaaatcttgttgtggaa 483
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 115 ctacccacaaaagaaaattaagaaaaagaaattaaaaacgataaaaatcttgttgtggaa 56

                                                                  
Query: 484 gctgtagtgtgtcacagtgtgtcccacaatgtactctcttgtccacacttcttca 538
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  gctgtagtgtgtcacagtgtgtcccacaatgtactctcttgtccacacttcttca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)