BAC Information

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BAC

Clone NameMSMg01-178H10
Chromosome14 (Build37)
Map Location 99,403,974 - 99,548,034
singlet/doubletdoublet
Overlap gene2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e
Upstream geneDach1, LOC635593, LOC619716, LOC100043787
Downstream geneLOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178H10.T7 (MSMg01no178_h10.b1)MSMg01-178H10.TJ (MSMg01no178_h10.g1)
ACCAG372541AG372542
length734737
length of high quality
(start - end)		580 (46 - 625)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no178_h10.b1 PHD_FILE: MSMg01no178_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:16 2005CHROMAT_FILE: MSMg01no178_h10.g1 PHD_FILE: MSMg01no178_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,403,974 - 99,404,550)(99,547,517 - 99,548,034)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGGCTTTCTCATGAAAGTAATTATTAGATGCTGAATCGGTAACT
GATCACTGTGAAGAAGAAGAATAGAAAAACGTCGTGCAAGGTCAGCAACA
TGGGAAGCCATGGCCAGATTCTCTAGGAAAATACCAAGTTCTGATGCTGT
ACATACAATGTAATTTCAAAGCTGCTCATCTTAGGAAGTGTATCTCAAGT
GTGGCCTCATTAAAATGGACAATATTTTGTTCAGTTTCACCACAGCTGTG
CTTAAAGAGAGCAGGCAGGGAAGTAAGTTAGTCTCACAGAACTTCACTAA
ATGAAAAAATATTAACTATAACCATATTTCCTTAAAACTGAAGTGAAAAT
CATAGCCTGCTATCATGACATAATACAAACAAATTATGTTCTTAGAGGTC
AGGTGTAATGGCACATGCCTTGAATCCCAGTACTCAGTAGGCAGATTTCT
GCGAGTTCAAGGCCAGCCTAGTCAACATAGCAAGTTCCAGCCCAATCAGG
GTTACTTAGCAAGATCTGCCTCAGAGAGGGGGAAAAAAGTGTTCATAGGA
AAGACCAAAAAAGAAAGAAACATCTAGAGTGCATAGTGTTCAAGGGCCTC
AAAAATACTGTAAATGACAGCATGCAAATACGTCAAGTATATATTTTACC
CTTTAACTCTTTATTTTGTAGTTTTTGTTAGGAA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTGGGTCCCACTGGCAGTACT
AGAAGAGGAATGTTTAAGTTGTAGATGGAGAAGCCCCATTCACTAAGTAC
ACTTCTTTTCTACTCACAACGAGTGTTAGAAAGAAAGGCAAGACACAGAG
AATCAAATAAAAAGAGTTATGACTAGAGAATAACAGTACAATTTTGTCAT
GGACAAATGGTAGTCTGCATCATCCAGCTAACTGGGTGATATGATAAGAC
ATAAACAAAATTCCAAGGCCATATGGAAGAGGAGATATTTACTCTTAAAT
GCATAAGGAAACAAAAGAGACATTCTCTCTCTCTCTCTTTTTTCTTTTGG
TTTTTGGAGACAGGGTTTCTCTGTGTATCCCTAGCTGTCCTGGAACTCAC
TTTGTAGACCAGGATGGACTTGAACTCAGAAATCTGCCTGCCTCTGCCTC
CCAAGTGCTGGGATCAAAGGCGTGTACCACCACGCCCGGCTCTTTTTTTT
TTTTGGAGACATTTTCTAAAAAGTGGCACACATATAAGGAACCTAAAGGA
CAAATAGCCAAAAAACAACAACAACAACAACAAAAAAAAACATTCTGAAA
GACAAGACCAAAGTAAGTAGGGGAAAGTTTCACAAGCCCGGGTTTTTACC
ACTTGTCTTTCCCGCTAGGTGTCTTCCAGATTTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_h10.b1 MSMg01no178_h10.b1 CHROMAT_FILE:
MSMg01no178_h10.b1 PHD_FILE: MSMg01no178_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:16 2005
         (580 letters)



>mm_chr14_99403771_99404750
          Length = 980

 Score = 1085 bits (561), Expect = 0.0
 Identities = 573/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatggctttctcatgaaagtaattattagatgctgaatcggtaactgatcactg 63
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggccgtgtcatgaaagtaattattagatgctgaatcggtaactgatcactg 263

                                                                       
Query: 64  tgaagaagaagaatagaaaaacgtcgtgcaaggtcagcaacatgggaagccatggccaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgaagaagaagaatagaaaaacgtcgtgcaaggtcagcaacatgggaagccatggccaga 323

                                                                       
Query: 124 ttctctaggaaaataccaagttctgatgctgtacatacaatgtaatttcaaagctgctca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctctaggaaaataccaagttctgatgctgtacatacaatgtaatttcaaagctgctca 383

                                                                       
Query: 184 tcttaggaagtgtatctcaagtgtggcctcattaaaatggacaatattttgttcagtttc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcttaggaagtgtatctcaagtgtggcctcattaaaatggacaatattttgttcagtttc 443

                                                                       
Query: 244 accacagctgtgcttaaagagagcaggcagggaagtaagttagtctcacagaacttcact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 accacagctgtgcttaaagagagcaggcagggaagtaagttagtctcacagaacttcact 503

                                                                       
Query: 304 aaatgaaaaaatattaactataaccatatttccttaaaactgaagtgaaaatcatagcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaatgaaaaaatattaactataaccatatttccttaaaactgaagtgaaaatcatagcct 563

                                                                       
Query: 364 gctatcatgacataatacaaacaaattatgttcttagaggtcaggtgtaatggcacatgc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctatcatgacataatacaaacaaattatgttcttagaggtcaggtgtaatggcacatgc 623

                                                                       
Query: 424 cttgaatcccagtactcagtaggcagatttctgcgagttcaaggccagcctagtcaacat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttgaatcccagtactcagtaggcagatttctgcgagttcaaggccagcctagtcaacat 683

                                                                       
Query: 484 agcaagttccagcccaatcagggttacttagcaagatctgcctcagagagggggaaaaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agcaagttccagcccaatcagggttacttagcaagatctgcctcagagagggggaaaaaa 743

                                                
Query: 544 gtgttcataggaaagaccaaaaaagaaagaaacatct 580
           ||||||||||||||||| |||||||||||||||||||
Sbjct: 744 gtgttcataggaaagacaaaaaaagaaagaaacatct 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no178_h10.g1 MSMg01no178_h10.g1 CHROMAT_FILE:
MSMg01no178_h10.g1 PHD_FILE: MSMg01no178_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:16 2005
         (625 letters)



>mm_chr14_99547517_99548541
          Length = 1025

 Score = 1002 bits (518), Expect = 0.0
 Identities = 518/518 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtgggtcccactggcagtactagaagaggaatgtttaagttgtagatggagaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caagtgggtcccactggcagtactagaagaggaatgtttaagttgtagatggagaagccc 459

                                                                       
Query: 61  cattcactaagtacacttcttttctactcacaacgagtgttagaaagaaaggcaagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cattcactaagtacacttcttttctactcacaacgagtgttagaaagaaaggcaagacac 399

                                                                       
Query: 121 agagaatcaaataaaaagagttatgactagagaataacagtacaattttgtcatggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agagaatcaaataaaaagagttatgactagagaataacagtacaattttgtcatggacaa 339

                                                                       
Query: 181 atggtagtctgcatcatccagctaactgggtgatatgataagacataaacaaaattccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atggtagtctgcatcatccagctaactgggtgatatgataagacataaacaaaattccaa 279

                                                                       
Query: 241 ggccatatggaagaggagatatttactcttaaatgcataaggaaacaaaagagacattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ggccatatggaagaggagatatttactcttaaatgcataaggaaacaaaagagacattct 219

                                                                       
Query: 301 ctctctctctcttttttcttttggtttttggagacagggtttctctgtgtatccctagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctctctctctcttttttcttttggtttttggagacagggtttctctgtgtatccctagct 159

                                                                       
Query: 361 gtcctggaactcactttgtagaccaggatggacttgaactcagaaatctgcctgcctctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gtcctggaactcactttgtagaccaggatggacttgaactcagaaatctgcctgcctctg 99

                                                                       
Query: 421 cctcccaagtgctgggatcaaaggcgtgtaccaccacgcccggctcttttttttttttgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  cctcccaagtgctgggatcaaaggcgtgtaccaccacgcccggctcttttttttttttgg 39

                                                 
Query: 481 agacattttctaaaaagtggcacacatataaggaacct 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 38  agacattttctaaaaagtggcacacatataaggaacct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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