Query= MSMg01no178_p01.b1 MSMg01no178_p01.b1 CHROMAT_FILE:
MSMg01no178_p01.b1 PHD_FILE: MSMg01no178_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:50 2005
(600 letters)
>mm_chr14_80427351_80428350
Length = 1000
Score = 1104 bits (571), Expect = 0.0
Identities = 591/602 (98%), Gaps = 6/602 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgaagaaacattgcttactggctcattctcactttaatgctcacccagccttc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgaagaaacattgcttactggctcattctcactttaatgctcacccagccttc 264
Query: 65 ttacatatgccagggctcactaactagggatggtgttgcccatggtgggcagatccttcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacatatgccagggctcactaactagggatggtgttgcccatggtgggcagatccttcc 324
Query: 125 tacatcaataaacaatcaagaaaatgctcccacagatatgccacaggccaatctgatgta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatcaataaacaatcaagaaaatgctcccacagatatgccacaggccaatctgatgta 384
Query: 185 agtaataccccagttaatattccctcagataactctagactgtgtcaatttgaaagctga 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtaataccccagttagtattccctcagataactctagactgtgtcaatttgaaagctga 444
Query: 245 agctaactaggagaacctctaaggcctgccccatagtgacccactttctccgctatgccc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agctaactaggagaacctctaaggcctgccccatagtgacccactttctccgctatgccc 504
Query: 305 cacttgccaaaggtttcataaccttctgatacaatgccagtatctggggaccaagtattc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacttgccaaaggtttcataaccttctgatacaatgccagtatctggggaccaagtattc 564
Query: 365 aaacacacgagcctgtagggaacattttacattcaaaccataacgaatggcttggcacag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaacacacgagcctgtagggaacattttacattcaaaccataacgaatggcttggcacag 624
Query: 425 ctgcatgctttttctccctcagttcagtggtgccaatttcactattttattctcattagt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 ctgcatgctttttctccctcagttcagtggtgccaatttcactattttattcttattagt 684
Query: 485 atttcttttaacttcttcctcatgacccaaaccttttcttctctacttcatgtcccactt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atttcttttaacttcttcctcatgacccaaaccttttcttctctacttcatgtcccactt 744
Query: 545 gtgtgtgtgtgtgtgtgtgtgtgtgt------tttcanntgncaccaggacttattttct 598
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 745 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcaggtgccaccaggacttattttct 804
Query: 599 ct 600
||
Sbjct: 805 ct 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_p01.g1 MSMg01no178_p01.g1 CHROMAT_FILE:
MSMg01no178_p01.g1 PHD_FILE: MSMg01no178_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:50 2005
(620 letters)
>mm_chr14_80572034_80573054
Length = 1021
Score = 1065 bits (551), Expect = 0.0
Identities = 593/621 (95%), Gaps = 24/621 (3%)
Strand = Plus / Minus
Query: 1 cagagagttattataatgagaagaacctttcaacaatgatgctctgtctggtgatcacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cagagagttattataatgagaagaacctttcaacaatgatgctctgtctggtgatcacac 635
Query: 61 caagaccccagatgtgactaaagtcgtggagaggaatgtcagtaggggacactagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 caagaccccagatgtgactaaagtcgtggagaggaatgtcagtaggggacactagagaaa 575
Query: 121 ggggctatgaaaacgagaaaggatggagaaagcaatggctactaagaaatattattcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggggctatgaaaacgagaaaggatggagaaagcaatggctactaagaaatattattcaga 515
Query: 181 tttttagataagaacagagtggttgatgtttattaaacagaggatcattaacagtacaca 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 514 tttttagataagaacagagtggttgatgtttattaaacagaagatcattaacagtacaca 455
Query: 241 aaactcagggtaattcttgttttttaaatgagaatctatgggatct-aaaaaaaaatggt 299
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 454 aaactcagggtaattctcgttttttaaatgagaatctatgggatctaaaaaaaaaatggt 395
Query: 300 tgcatggaactagccaacaaatacaggtctttgttttaaatttacataaccccttggaag 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tgcattgaactagccaacaaatacaggtctttgttttaaatttacataaccccttggaag 335
Query: 360 cctctaccacctcccgctactgcccccaggagtcctcccctactgcccccaggagtcctc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 cctctaccacctcccgctactgcccccaggagtcctcccctactgcccccaggagtcctc 275
Query: 420 ccctactgcccccaggagtcctcccctactgcccccaggagtcctcccctactgccccca 479
||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 274 ccctactgcccccaggagtcctcccctactgcccccaggagtcct-ccct---------- 226
Query: 480 ggagtcctcccctactgcccccaggagtcctcccctagagttctgctactttggatcaac 539
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ------------tactgcccccaggagtcctcccctagagttctgctactttggatcaac 178
Query: 540 tgtctagcagaatgactttgaacaggttactggacttcagagtccatctctgcaaacaag 599
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 177 tgtctagcagaatgactttgaacaggtcactggacttcagagtccatctctgcaaacaag 118
Query: 600 agcatccactccaagcacggt 620
|||||||||||||||||||||
Sbjct: 117 agcatccactccaagcacggt 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1021
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1011
Effective search space: 616710
Effective search space used: 616710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
