XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
AGCTTATATTTAGGAATATATGTATATAATACACATGCATATAATTACTA
TTAATGGTTAAATCCGCCATGAATTTGAAGGAGAATATGGAGGAGTATAT
GAAAAGTTTTGTAGGGAGTAAAGAGAAAGAAGAAAGAAACATTGTAATAA
ATTATCATCTCAGAAATAAGAGAAAGAAGAAAAACTTGCTAGTTATTTTA
GATACCTTAGTAATCTTTTAAACACAACTGATTTATCTATTATGACTTCA
AAATATAATAGATATGAATATTTACTTATTGAATGCCCTTAATTTATAAT
ATTGTAAAATTACTCTCACTTATAGCTCTAGGTATGATCTCATTTAATAC
AATTTTATTTCTTTTAAAAACATAAAATGCAGAAAAACAATGTCCTTTTT
TAACAAATGGTTCTGGGAAACGTGGGGTTTCCTATAGAGGAGGAAATCTA
GGTCTCACTTTCTACATTTACGTCTCGCTTAATTGAGGATGGGTTGAAGA
ACTTAACTGATGGATCCTTGAGCTTATAGAGGAACACAGATATAAAACCC
TTCTTGACTTACGTCAGCCCTTTCTAACTATTACTTCTGTGTTACAGAAA
TGTACTCTACATTATCTGCACAGCGATTACCAGAAATTTTATTTTCCTAT
TCCGCCCACTTTTTCTTCCCGCCACCTTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATCCTGTGGCCAAACAATTATTAGAACTCAAA
TCCTCAGGTCACACCCATTTGCAAAGGAATTGGGACATAGATTTAAAAAA
ATGAGAGCCAAGAAAAACATAGGACATGGATTTCAGTTTCTAGTTTATAT
CCTTAGCCATAAAATTCGACCCATAGTTGATATTTAAGTAACTTATGGAA
ATGCTTTTATCATGTACTGTAGGCAGATGAACTTCCTTGTGAAGAGAATA
CTGTGCATGTAAGTAACAGATTGCATCCCTTCGTGCCATCAGAGAGACTA
ATGATAATTTACCTATACCAGGTCTTTCGAGAGAATTCAGAAGAGTGGAA
GTGTTGAGATAAACAAGTTTTGGCCTTTTATTTATCTTTAAAGTTAATCT
TCTTCCATCTGGTAAGGTGTTAATGGAAACAATTTGTCCTCTTTATTTAT
AGCCAAATCACACAGCTGAAATTACCTTGTGTAGGTGTAGAGAAATCTGT
GTGTCTCTGTATTGCGTATATAGACCCTCAGTTGTAAAACAAGCTCTAAT
AACTAGCTATTGGGATCAATCAAGAGAGATATTTTATGTACATTGCTAAT
GCTTTAAGCTGTGTTCTTAACTTTCTGTTAAGTACTGTGCCATCTCAATT
GCTTTTATCAAGTCTGACTGCTAT

Query= MSMg01no180_j09.b1 MSMg01no180_j09.b1 CHROMAT_FILE:
MSMg01no180_j09.b1 PHD_FILE: MSMg01no180_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:51 2005
         (315 letters)



>mm_chr14_81514147_81514861
          Length = 715

 Score =  542 bits (280), Expect = e-158
 Identities = 301/308 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcagcttatatttaggaatatatgtatataatacacatgcatataattactat 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcagaagcttatatttaggaatatatgtatataatacacatgcatataattactat 628

                                                                       
Query: 65  taatggttaaatccgccatgaatttgaaggagaatatggaggagtatatgaaaagttttg 124
           ||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taatggcaaaataggccatgaatttgaaggagaatatggaggagtatatgaaaagttttg 568

                                                                       
Query: 125 tagggagtaaagagaaagaagaaagaaacattgtaataaattatcatctcagaaataaga 184
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 567 tagggagtaaagagaaagaagaaagaaacattgtaataaattaccatctcagaaataaga 508

                                                                       
Query: 185 gaaagaagaaaaacttgctagttattttagataccttagtaatcttttaaacacaactga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaaagaagaaaaacttgctagttattttagataccttagtaatcttttaaacacaactga 448

                                                                       
Query: 245 tttatctattatgacttcaaaatataatagatatgaatatttacttattgaatgccctta 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 447 tttatctattatgacttcaaaatataatagaaatgaatatttacttattgaatgccctta 388

                   
Query: 305 atttataa 312
           ||||||||
Sbjct: 387 atttataa 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no180_j09.g1 MSMg01no180_j09.g1 CHROMAT_FILE:
MSMg01no180_j09.g1 PHD_FILE: MSMg01no180_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:52 2005
         (521 letters)



>mm_chr14_81341394_81342314
          Length = 921

 Score =  969 bits (501), Expect = 0.0
 Identities = 516/521 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcctgtggccaaacaattattagaactcaaatcctcaggtcacacccatttgcaaagg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 201 aatcctgtggccaaacaattattagaactcaaatcctcaggccacacacatttgcaaagg 260

                                                                       
Query: 61  aattgggacatagatttaaaaaaatgagagccaagaaaaacataggacatggatttcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgggacatagatttaaaaaaatgagagccaagaaaaacataggacatggatttcagt 320

                                                                       
Query: 121 ttctagtttatatccttagccataaaattcgacccatagttgatatttaagtaacttatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctagtttatatccttagccataaaattcgacccatagttgatatttaagtaacttatg 380

                                                                       
Query: 181 gaaatgcttttatcatgtactgtaggcagatgaacttccttgtgaagagaatactgtgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatgcttttatcatgtactgtaggcagatgaacttccttgtgaagagaatactgtgca 440

                                                                       
Query: 241 tgtaagtaacagattgcatcccttcgtgccatcagagagactaatgataatttacctata 300
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tgtacgtaacagattgcatcccttcgtgccatcagagagactaaagataatttacctata 500

                                                                       
Query: 301 ccaggtctttcgagagaattcagaagagtggaagtgttgagataaacaagttttggcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaggtctttcgagagaattcagaagagtggaagtgttgagataaacaagttttggcctt 560

                                                                       
Query: 361 ttatttatctttaaagttaatcttcttccatctggtaaggtgttaatggaaacaatttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatttatctttaaagttaatcttcttccatctggtaaggtgttaatggaaacaatttgt 620

                                                                       
Query: 421 cctctttatttatagccaaatcacacagctgaaattaccttgtgtaggtgtagagaaatc 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cctctttatttatagccaaatcacacagctgaaattaccttgtgtaagtgtagagaaatc 680

                                                    
Query: 481 tgtgtgtctctgtattgcgtatatagaccctcagttgtaaa 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgtgtctctgtattgcgtatatagaccctcagttgtaaa 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)