BAC Information

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BAC

Clone NameMSMg01-180M07
Chromosome14 (Build37)
Map Location 29,452,553 - 29,452,844
singlet/doubletsinglet
Overlap genenone
Upstream geneErc2, LOC100040206, Wnt5a, LOC100040218
Downstream geneCacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180M07.T7 (MSMg01no180_m07.b1)MSMg01-180M07.TJ (MSMg01no180_m07.g1)
ACCAG374153AG374154
length732754
length of high quality
(start - end)		529 (40 - 568)292 (69 - 360)
definitionCHROMAT_FILE: MSMg01no180_m07.b1 PHD_FILE: MSMg01no180_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:06 2005CHROMAT_FILE: MSMg01no180_m07.g1 PHD_FILE: MSMg01no180_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACATTCATTCCTTGAAAAAAATATAGCATTTTAAATGATTCTTTAATAAT
TTCATACAATATATTGTTCCCCTTTCCTCCCTCCCTTAATCCCTCCTAAG
TCTATCTGAACCTCCCTAACTTTCCAAAACTTCATGTCCTCCCTTTTTGT
TTGTAACAACCCCTTGGTTACAATTTTTACTTCTTATAACTCATAGGTAT
GGAGCCATACAATGGAGCATGGTCAACCTACCAGATTCCACATTCTTAAA
GGAGAGAAATGGCTGTCCCTGCAGGAGCCTCATCTGGAAGTAGGATCTAG
AATATCAAATGGCTTGACCTTATGCAGGCAACCCCAGCTGCTGTGACTTC
ACAGGTATAACAACCATGTTGTGACCTGCAGACATTGTTTAACTCAAGTC
CTTCCCATCTCTGGCTCTTAGAGTCTTTCTGCTCCTTCTTCCATGATGGT
CCCCCAGCCTTAGAGAAGGGATGATATAAATACTCCACTGAGGCATTTTC
TCTGTGCTTTGACTAGTGNTGGGTTTCTGGGCTAACCTCTATCTGCTACA
CAAAGAACCATTCATGGTTATATTGAACTTCTTTTTCACCAATGACCCTA
AAGGAAAAAAAGCATACATCTTGGCCCAAAAATTTTTTTTAAAATGATGC
TGTTCATGTACGAATGAACAACACTACCTATT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATTGCAAGGTATAGTGACCACCTCTTGGCCA
GCTTAAGAGTCCCATGGACTCAAATGAAGCCAGTTGGTGTCATTTCAGTT
GGCTCGACAGGATAGAAGCCTCGGTGTTTCTCAGAATTTGGACCTGCTGC
TATAAAGCACAAAGTGAGAAATCCCTCATTGACTATCTAGTTCCACATGA
ATGTTTAGTGGGGCGGCTGTAAAGTCTATGCTGGGAAGATGCAGGGGAGA
TTGGCCTAGGTGACATCTTCTTTTCATACTTTCAAATTTCAACTTAAACT
CTAGCCCCTTTGATGGAGCGCCCGCCCTCCAGTCATTATAAAACACAACA
TGTGGTTCATGTGCCCCCACTTCCATTGACATTTCCATATACTATTAAGT
GTGCTCTTTTTTTATTTATTACTTGGTGCTGTATAGATGTCTATTTAGAT
AACCGTACTCGCTATTCGAGCATGTTAACCTGTTTTCAAGTCATGACCTC
CTATATACAAGCTGTTTTTTGCTTACATGTTCTTTCTAACCACTATTGTC
GGTTTTTTTGTCATCCATTATATATCCTTGACTCCCTTCATTTTTTCCCC
TTTGTATTCATTCCCTTCTCTTTTACCCGTCCATTGTTATTATAAAATTT
TTATCATTTTTTCTCATTCTCTTATCTCCGACTTTCACCCCTTTCTCCAC
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_m07.g1 MSMg01no180_m07.g1 CHROMAT_FILE:
MSMg01no180_m07.g1 PHD_FILE: MSMg01no180_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:06 2005
         (292 letters)



>mm_chr14_29452353_29453044
          Length = 692

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgcaaggtatagtgaccacctcttggccagcttaagagtcccatggactcaaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattgcaaggtatagtgaccacctcttggccagcttaagagtcccatggactcaaatgaa 260

                                                                       
Query: 61  gccagttggtgtcatttcagttggctcgacaggatagaagcctcggtgtttctcagaatt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gccagttggtgtcatttcagttggctcgacaggatagaagcctgggtgtttctcagaatt 320

                                                                       
Query: 121 tggacctgctgctataaagcacaaagtgagaaatccctcattgactatctagttccacat 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggacctgttgctataaagcacaaagtgagaaatccctcattgactatctagttccacat 380

                                                                       
Query: 181 gaatgtttagtggggcggctgtaaagtctatgctgggaagatgcaggggagattggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatgtttagtggggcggctgtaaagtctatgctgggaagatgcaggggagattggccta 440

                                                               
Query: 241 ggtgacatcttcttttcatactttcaaatttcaacttaaactctagcccctt 292
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtgacaccttcttttcatactttcaaatttcaacttaaactctagcccctt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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