BAC Information

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BAC

Clone NameMSMg01-180N12
Chromosome14 (Build37)
Map Location 83,974,085 - 83,974,313
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180N12.T7 (MSMg01no180_n12.b1)MSMg01-180N12.TJ (MSMg01no180_n12.g1)
ACCAG374205
length720717
length of high quality
(start - end)
---230 (120 - 349)
definitionCHROMAT_FILE: MSMg01no180_n12.b1 PHD_FILE: MSMg01no180_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:11 2005CHROMAT_FILE: MSMg01no180_n12.g1 PHD_FILE: MSMg01no180_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGTCTGTGAAAGTAAAAACAAAACAAAACAA
AACAAAATAATAATTCCAGTATGTTTCCAGTGATCAGTTTGTAATACGCT
GTCTAATGTTCATAGTACCTATCACAATAAAAAATCTTCTATTTGATGTA
TCAGAAACCTGCAGGCTTTGATAAAACATAATGGAATGCAGAGTAAATAT
TAGATTTACAGAATTACTAAATGTGGAAGAAGAAACTACTGTTGTAGAAC
TTGATAACAGAATATAAAGAAATATTCTGATTGTTTTTCTAAAGCATCTT
TANATACTTACCTGTCAGCCTTTTTTCCTGCTGGGGATTTTGAGTTTATA
TAACTCCCCAGATAAATAAAAAAATAAATTTTTTATCAATATGCTTATAA
ATAATTATTTAGTAAGTTATTGAAAACTATTAGTCCAGCTAGACAAATAG
TTAAATTCAGAAGAGTATGAAATAGACCATTCTCTAGCTGTGTTTATGAT
AAATTATGATGCTTTCCTGGCCTATATCACTCATTTGTAAATACACTGGT
AAATAAGTCTTTAGACAAAAGGTTTCTCTACATCAAAAGAAGTTACTATG
ATGAACAAGCCACATAGTGTTGTAAAAATTTATAGGACAAATTAAATGAG
CCTGTTAAAGGAAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_n12.g1 MSMg01no180_n12.g1 CHROMAT_FILE:
MSMg01no180_n12.g1 PHD_FILE: MSMg01no180_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:11 2005
         (230 letters)



>mm_chr14_83973885_83974514
          Length = 630

 Score =  427 bits (221), Expect = e-124
 Identities = 227/229 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtttccagtgatcagtttgtaatacgctgtctaatgttcatagtacctatcacaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tatgtttccagtgatcagtttgtaatacgctgtctaatgttcatagtacctatcacaata 370

                                                                       
Query: 61  aaaaatcttctatttgatgtatcagaaacctgcaggctttgataaaacataatggaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aaaaatcttctatttgatgtatcagaaacctgcaggctttgataaaacataatggaatgc 310

                                                                       
Query: 121 agagtaaatattagatttacagaattactaaatgtggaagaagaaactactgttgtagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agagtaaatattagatttacagaattactaaatgtggaagaagaaactactgttgtagaa 250

                                                            
Query: 181 cttgataacagaatataaagaaatattctgattgtttttctaaagcatc 229
           ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 249 cttgataacagaagagaaagaaatattctgattgtttttctaaagcatc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)