BAC Information

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BAC

Clone NameMSMg01-180P15
Chromosome14 (Build37)
Map Location 98,028,213 - 98,028,461
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043366, LOC668654
Downstream geneEG668659, Dach1, LOC635593
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180P15.T7 (MSMg01no180_p15.b1)MSMg01-180P15.TJ (MSMg01no180_p15.g1)
ACCAG374298AG374299
length816730
length of high quality
(start - end)
255 (37 - 291)363 (368 - 730)
definitionCHROMAT_FILE: MSMg01no180_p15.b1 PHD_FILE: MSMg01no180_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:20 2005CHROMAT_FILE: MSMg01no180_p15.g1 PHD_FILE: MSMg01no180_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGA
GAGACGATGGCTTTTATCTTGATTAGTTAGGTTGTTCCCTAGGGGTATGG
GTGTCTTAGGGACTGGCTAGAGTTCTGGGGACTTTCCTGAACTGTTGATG
GGGAGCCTGAAAACTCCTGCTGACTAACTGTTCTTGCCTCAAGCCAATTG
GTGGGCACCTTCCGATGGTGGGGTAGTTTCTGATTGGCTGCTCTCAGGCT
GTAGTTTTTTGTTTGTTTGTTTGTTTTTGTTTTTTGTTGCTGCCCCCCCC
TTNTTTTTTTTTTTTCCTTTTTTTCCCCTTTTTTTCCCCCTTCCTCCTTT
TTCTTCCCCCTCTTTTCTTCTCTCCCCCCCCTTCTCTCTTTTCTTTTTTT
TTTTTCTCCCCCCCCTTTTTTTATTATTTTTTTTTCTTTTCTTTTTTCTC
CCCTCCCCCTCCCCCCCATTTCCCTCTTCTTTTTCTTTCTCCCCTCCCCC
CTCGCCCTTCTCTTTTTTTTGTCCTTCTCTCTCTCCCCTCTTCCTCTCTT
TCCCCCCTTTCTCTTTCTTTCCCTCTTTTTCTTTTCTTCTTCTCCCTCCC
CACACCAAAATAATTTATTATTTTTTTATCCTTCCTCTACCCCCATCTTC
CCCCCTTTTTTTTCCTTCACCCCCCCCCACCCCCCTCCTTCTATCTTACC
CCTATATTGTCTTTTTCCCTATTTACACCCTTTATATCCCCCCACCCCTC
CCCCCCTCTCCCTTCTACTTTTTCCCCCCTACCCACCATCCTCCTTATTC
TCCCACCCCCCTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTGGAGGGCTTTTCCTAATTGATGCTAGAATTTTG
TCTAACTTGACCTAGTATTTGTAAACATAGCTAATATAAGTTGATCCAGT
GACAGTCATGTCATGTCAAGATTCAGCAACTGACAGCTCTAGTCCTCATG
TGGCATTTCTTATAATTCTCATGGCCTTCCTTTTTTTTCTGAAGTGTCCT
GATCCTTGGTTGGATGTTGATATAGAAGACCTATCCACACGTGAGGATTT
ATTCTTGGCACATTCATGTTATTATGCTCCTCATTAACCTCTACTTATTG
TTTAATACCACTCCCAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAACATTCTCTGACCATAGCTGAGATTAGCAAAAATATATACAG
GTATAAACATAAATATTTATAATTCATTTTGACACCATGAATATTCAACA
AAAACACATTAGTATTTTTCCTGTAGTCTATGTCCTCCTCATTCATGAAT
ATTTGAGTAAGATTACAGTAGGAGACATAAAGTTTATCTCAAGTCCAATT
TGAAGAGGTTTTGTTACTCCCATGGCCATCATGCTGCTTTGCTCCAGTGG
GTATATATATCATGCCAGATAGATTGTTACTAAATGCAAGAGAGAACGTT
GGCTTACACCATTGATCTACTTCCTCTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_p15.b1 MSMg01no180_p15.b1 CHROMAT_FILE:
MSMg01no180_p15.b1 PHD_FILE: MSMg01no180_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:20 2005
         (255 letters)



>mm_chr14_98028148_98028802
          Length = 655

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctagagagacgatggcttttatcttgattagttaggttgttccctaggggtatgg 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaattctagagagaagatggcttttatcttgattagttaggttgttccctaggggtatgg 255

                                                                       
Query: 65  gtgtcttagggactggctagagttctggggactttcctgaactgttgatggggagcctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtgtcttagggactggctagagttctggggactttcctgaactgttgatggggagcctga 195

                                                                       
Query: 125 aaactcctgctgactaactgttcttgcctcaagccaattggtgggcaccttccgatggtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 aaactcctgctgactaactgttcttgcctcaagccaattggtgggcaccttccgatggtg 135

                                                                       
Query: 185 gggtagtttctgattggctgctctcaggctgtagttttttgtttgtttgtttgtttttgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gggtagtttctgattggctgctctcaggctgtagttttttgtttgtttgtttgtttttgt 75

                    
Query: 245 tttttgttg 253
           |||||||||
Sbjct: 74  tttttgttg 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)