Query= MSMg01no180_p19.b1 MSMg01no180_p19.b1 CHROMAT_FILE:
MSMg01no180_p19.b1 PHD_FILE: MSMg01no180_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:21 2005
(516 letters)
>mm_chr14_76982080_76982995
Length = 916
Score = 944 bits (488), Expect = 0.0
Identities = 506/512 (98%), Gaps = 2/512 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcttaaat-acaaaagttgtcctcacctttgaagctattaagcaataggcact 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gaattctgcttaaataataaaagttgtcctcacctttgaagctattaagcaataggcact 656
Query: 64 cactttagagtatgccttagccaataagaactgtttctgagtctcccctttgcataaagt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cactttagagtatgccttagccaataagaactgtttctgagtctcccctttgcataaagt 596
Query: 124 tgagtcagtatcattagttgggaaataattacacagtacatagcacacaacccacaagag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgagtcagtatcattagttgggaaataattacacagtacatagcacacaacccacaagag 536
Query: 184 tctctgctttgttttgatttttaaatcaacccttttacaggaagtcggttttcacccagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tctctgctttgttttgatttttaaatcaacccttttacaggaagtcggttttcacccagg 476
Query: 244 taactgttgcaaaatatttacccaggtaagaaaagcattagtcagccaatgagaagctct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 475 taactgttgcaaaatatttacccaggtaagaaaagcattagtcagccaatgagaagccct 416
Query: 304 tctgtggtgagacttcatccacctcattaccgtttactacactgggcatctaattacctt 363
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tctgtggtgagacttcatctacctcattaccgtttactacactgggcatctaattacctt 356
Query: 364 caggatggaacacatcctgtttccacttgctcaaactctctgacttgccccttggctttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 caggatggaacacatcctgtttccacttgctcaaactctctgacttgccccttggctttc 296
Query: 424 cagtgctggctgagaagtctagagccacaagtaaactgaagactcagatctttcttggag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cagtgctggctgagaagtctagagccacaagtaaactgaagactcagatctttcttggag 236
Query: 484 attagttacatccctcatttgggggagggggg 515
|||||||||| ||||||||||||| |||||||
Sbjct: 235 attagttacacccctcatttgggg-agggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_p19.g1 MSMg01no180_p19.g1 CHROMAT_FILE:
MSMg01no180_p19.g1 PHD_FILE: MSMg01no180_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:21 2005
(539 letters)
>mm_chr14_76943593_76944531
Length = 939
Score = 988 bits (511), Expect = 0.0
Identities = 532/539 (98%)
Strand = Plus / Plus
Query: 1 cacaggcttcaatatgggtctgtacctgaagagattaagcagagagaaaccaatctagct 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 201 cacaggcttcaatatgggtctgtacctgaagagattaatcagagagaaacaaatctagct 260
Query: 61 agttcagcaggctcaaggacttccaattcccaggctaagagcaggcatttgatagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcagcaggctcaaggacttccaattcccaggctaagagcaggcatttgatagagaaa 320
Query: 121 taagttttacatttcagatagagtctatatagtattaataaaaataaagccagctactaa 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagttttacatttcagatatagtctatatagtattaataaaaataaagccagctactaa 380
Query: 181 actaaacaagatgtaacaaagcaagaaatggtccagagatgtccctgttgggcaactgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaaacaagatgtaacaaagcaagaaatggtccagagatgtccctgttgggcaactgta 440
Query: 241 gtctcaaagggacatacgagtcccactgttttgaatctcacatggaaagctacatatctg 300
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 gtctcaaagggacatacgcgtcccactgttttgaatctcacatggaaaactacatatctg 500
Query: 301 cattcttttaaggaaatgaaactgtgttgtatgctgtctgaagtataaaccactattctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cattcttttaaggaaatgaaactgtgttgtatgctgtctgaagtataaaccactattctc 560
Query: 361 tgaggttggtccacatagtgatgtttcctttctcttgggtggcggtagtgtttatgtttt 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tgaggttggtccacatagtgatgtttcctttctcttgggtggcggtggtgtttatgtttt 620
Query: 421 agcttacagggaaacagtgttagccctgaggatggctctcattcatcctcggaagcaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcttacagggaaacagtgttagccctgaggatggctctcattcatcctcggaagcaaga 680
Query: 481 ggccggcaggaatgcgggctgatggttttctgatagaccaagagtgtaaagttgaggct 539
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ggccggcaggaatgcgggctgatggttttctgatagaccaagagtggaaagttgaggct 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
