BAC Information

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BAC

Clone NameMSMg01-181N18
Chromosome14 (Build37)
Map Location 104,480,638 - 104,481,003
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
Downstream genePou4f1, 2610206B13Rik, D130009I18Rik, LOC435420
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181N18.T7 (MSMg01no181_n18.b1)MSMg01-181N18.TJ (MSMg01no181_n18.g1)
ACCAG374911AG374912
length807751
length of high quality
(start - end)
227 (76 - 302)370 (45 - 414)
definitionCHROMAT_FILE: MSMg01no181_n18.b1 PHD_FILE: MSMg01no181_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:26 2005CHROMAT_FILE: MSMg01no181_n18.g1 PHD_FILE: MSMg01no181_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGCCCAATGGGAAGGTCTAGGCC
TACGAGTGAATGTTTATGTTTACAGGCTTTTGCTGTGCAAACCTTGTTCC
TTTATTTAAAACTACTGGCTAAATAAAATTGGCTACAGGCAGTTACTGGA
GGGATCACGGACAGGCAGGTTTGGAGTTACCTGCTTGGGTGTGGAGAAGA
GAGAGGAGAGAAGAGAGACCAGGTGGAGAAGGAGGAAGAAGAGAGGAGGA
AGTNANNNTGAGGGGNAGANGTTTTTTTTTAATAAGGTCAACAAAAAAAA
AAAAAATTTGTTTTTTTTTTTTTCCCCCCCCCCCCCCCCTATTTTTATTT
AATTTTTACGAATTTTGAAACCCCCCCCCCCTAAAAAAAAAAAAAAAATA
TTTCTCGCCCTTGTTTTTTTATTCCCCCCCCCCTTTTTTTTTTTTGATTT
TTTTATTACACTATTCACCTAAATCATTTCCTAATAAACTAACTAATACA
TATTTTTCCCCTTATTCTCCCCCCTTTTATTTCTCCCCCTCCACCCATTT
ATTTTTTTTTCCCCCATTGTTTATACCACCCCCCTCCCCCACCCCCATCC
CCCATTTTTTTCCACCCCCCCCCCCCCCCCCCCTTTTTTTTTTTTTCCTC
CCGACTCTTTCCCCCCCCCATTTTTTTTTCCTTTTTTTATCAACCCACCC
CCTCCCCCCCCCACTCATACACCCTATTTATTTCCTCATTACCCCCTCTA
ATCTCAT
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGTCTATGCCGGTTATTTTCATTCAAACTCTCTATGCTTCCATGC
CTCTCTTCTGAAATGGTAATGTAGTTTTGGTGGCATTTAGGTGTAAATTA
CGTAATTCATATTTTTTATCCTAAAGAAAATTACAACAGATTGCTTTGAG
TCTCAGGAGAGACTTTGGACTTTTAAACATGGGTTAGAAGAGACCTCACC
TGATGTACATAAAATAATGCCTACACAATTGACGTCAGAAATGTTATATT
GAGTGGTTTGTGAGAGGGTAACAAATACGTCTTTTCTTGGAACTAATAAC
CTCAGAAATAACTTTTCTTCTACAAGAGAAAAGAGCATTTGTTTCCTTCC
TTGGTGTAGTGCACCCCCCATTTGTTAATGCTAATCCTATCCAGAGGTTA
GCTAGCAAAACAGATTTCTCAATAAGTCATAAGGATTGCAAAATTTTCCA
CAAACCACACACTGCGTGGCCTACAGATTTAACGTTGGTCAGGTAATCTT
TACCATGGTTTGGATGCTATACGCCGCCTGTGTATCCCTTCCCATTATTG
AACTTATATAACTAATATCTCTTTCTCTGGATTCTTATTTTTATTAAAGA
CTTATATTATTATTTTCACGCCGCTCTGCCTTTATTTTATACATTATATT
CACCCCAATTAATTTATTTTTTCCCCCCGCCCTTCTTTACTGTTATTTTA
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_n18.g1 MSMg01no181_n18.g1 CHROMAT_FILE:
MSMg01no181_n18.g1 PHD_FILE: MSMg01no181_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:26 2005
         (370 letters)



>mm_chr14_104480259_104481028
          Length = 770

 Score =  677 bits (350), Expect = 0.0
 Identities = 362/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaagtctatgccggttattttcattcaaactctctatgcttccatgcctctcttc 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gaattcaagtctatgggggttattttcattcaaactctctatgcttccatgcctctcttc 686

                                                                       
Query: 65  tgaaatggtaatgtagttttggtggcatttaggtgtaaattacgtaattcatatttttta 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaaatggtaatgtagttttggtgacatttaggtgtaaattacgtaattcatatttttta 626

                                                                       
Query: 125 tcctaaagaaaattacaacagattgctttgagtctcaggagagactttggacttttaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcctaaagaaaattacaacagattgctttgagtctcaggagagactttggacttttaaac 566

                                                                       
Query: 185 atgggttagaagagacctcacctgatgtacataaaataatgcctacacaattgacgtcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgggttagaagagacctcacctgatgtacataaaataatgcctacacaattgacgtcag 506

                                                                       
Query: 245 aaatgttatattgagtggtttgtgagagggtaacaaatacgtcttttcttggaactaata 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 aaatgttatattgagtggtttgtgagagggcaacaaatacgtcttttcttggaactaata 446

                                                                       
Query: 305 acctcagaaataacttttcttctacaagagaaaagagcatttgtttccttccttggtgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acctcagaaataacttttcttctacaagagaaaagagcatttgtttccttccttggtgta 386

                 
Query: 365 gtgcac 370
           ||||||
Sbjct: 385 gtgcac 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)