BAC Information

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BAC

Clone NameMSMg01-182L16
Chromosome14 (Build37)
Map Location 50,574,315 - 50,574,614
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723
Downstream geneOlfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-182L16.T7 (MSMg01no182_l16.b1)MSMg01-182L16.TJ (MSMg01no182_l16.g1)
ACCAG375528AG375529
length772750
length of high quality
(start - end)
335 (67 - 401)304 (43 - 346)
definitionCHROMAT_FILE: MSMg01no182_l16.b1 PHD_FILE: MSMg01no182_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:33 2005CHROMAT_FILE: MSMg01no182_l16.g1 PHD_FILE: MSMg01no182_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:56:33 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTGGGCACCCCATTTTTTAATAGGG
TTATTAGAATTTTTGGAGTCTGGCTTCTTGAGTTCTTTGTATATCTTGGA
TATTAGTCCCCTATCAGATTCTTAAAAAGATGTTAAGCAAGACAACACTG
ATGTTTCTTAGGCCCATCAACTCTAGAGCAGTGGTTCTCAATCTTCCTAA
TGCTGCCCACCATTTAATATACTTCTTCATGTTATAGTGACCCCAAATAT
GAAATTATTTCTGCTGCTACTTCATAACTATAATTTTGCTACTCTTATGA
ATCATACTGCAAATATCTGTGTTTCCAGATGGTATTAGACCACCTCTGTG
AAAGGGTCATCCCCCCCCCTTTAGGCGTTATGATCCATATGTTGAGAACC
ACTGCTTTAGATCTATAGCCAGATCTAAGTCTAACCAGGCTCCTATTAGA
GTGGATAGAAAGTATTATTCCATACAGAGTTGTGCTACACTACTATAGAC
CTTACCGACTTTGCTTATTTATTTATTTTGCCCTCCCCCATTCCTTTACT
GTCCCCTCGACTTCTGTTCTTCTATCGCCTCCCCTTTTCTCCCCTCTTCT
CTTTTTTCTTCTCTCCCTCCCCTTTTTTACTCCTCCTTTGCCCATATCCC
TCCTTTATTTTTTTCCCTTTTTTCTCTCCCTTTTTTTTTTATTTTACTCC
CTTTCCTCTTCCCTCTCCTTCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGTTTGCTGGTATTTTATTGAGACTGTTTCCCTTTATGCTCATCAGAC
TTATTGTCTCTTAACTCCCTTTGTTTTTGTTCCAAACTGCTTTTGTTATT
GAAGTAATGAAGGCATTGTTGAACACTTTTTGGTTGCAATCTCTATATAC
ATAATTTATGAAGGTCTGGTTGAACTTTGCTGTAAATCCATCTAGGACTA
GATTTGGGTGCATGTTTTAGACGTCTCTTGGAAGGTCTTGGTCAAAAACT
CACAAGAGATTCTTGTGTCAATATTGAGATTTTAGGTGATCTTCAGCTCT
TGTTGTATTCCCCGCCCCCCCCCATAATATATATATTTATATTTAAAAGC
CTTTGTTCCCCCCCATAATAAAATATATATATGTATGTATATATATATAT
ATCCCACCATATATGTACCCACCATTCTTTTCCCCTATCCAACATATATT
TATCCCCCCTCGATTAATTTTCCCTTATATATTTTCTTCAACATCTTTTT
TTTCCCCATTTTTATCTCACCTATATTTTTTATTTACCTCTTTATTTTTT
ACCACATTTTATTAATACACTATTTTTTTCCCCCCTTTTATTTTTTTTTC
CTCCACCCATATATTTTTCCTCATTTTTTAATAATTCTACTCTAATCGAG
CATTTCACAATCCATACACATAATATAATCACATTTGCTTCACATCACCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no182_l16.g1 MSMg01no182_l16.g1 CHROMAT_FILE:
MSMg01no182_l16.g1 PHD_FILE: MSMg01no182_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:33 2005
         (304 letters)



>mm_chr14_50574195_50574898
          Length = 704

 Score =  565 bits (292), Expect = e-165
 Identities = 298/300 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtttgctggtattttattgagactgtttccctttatgctcatcagacttattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattcagtttgctggtattttattgagactgtttccctttatgctcatcagacttattg 361

                                                                       
Query: 65  tctcttaactccctttgtttttgttccaaactgcttttgttattgaagtaatgaaggcat 124
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tctcttaactgtctttgtttttgttccaaactgcttttgttattgaagtaatgaaggcat 301

                                                                       
Query: 125 tgttgaacactttttggttgcaatctctatatacataatttatgaaggtctggttgaact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgttgaacactttttggttgcaatctctatatacataatttatgaaggtctggttgaact 241

                                                                       
Query: 185 ttgctgtaaatccatctaggactagatttgggtgcatgttttagacgtctcttggaaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttgctgtaaatccatctaggactagatttgggtgcatgttttagacgtctcttggaaggt 181

                                                                       
Query: 245 cttggtcaaaaactcacaagagattcttgtgtcaatattgagattttaggtgatcttcag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cttggtcaaaaactcacaagagattcttgtgtcaatattgagattttaggtgatcttcag 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)