BAC Information

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BAC

Clone NameMSMg01-183C02
Chromosome14 (Build37)
Map Location 93,489,523 - 93,628,805
singlet/doubletdoublet
Overlap genePcdh9, LOC668566
Upstream geneLOC638252
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183C02.T7 (MSMg01no183_c02.b1)MSMg01-183C02.TJ (MSMg01no183_c02.g1)
ACCAG375816AG375817
length735726
length of high quality
(start - end)		688 (45 - 732)642 (73 - 714)
definitionCHROMAT_FILE: MSMg01no183_c02.b1 PHD_FILE: MSMg01no183_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:04 2005CHROMAT_FILE: MSMg01no183_c02.g1 PHD_FILE: MSMg01no183_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,489,523 - 93,490,207)(93,628,164 - 93,628,805)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATCACACATGCAACTATAAATTTGATCTTCTTTCCAGAATAAAT
CATAAAATAAAATTTGGTATACATATTAAGAAGAGTAGTGGATATAATTT
CACAGTAAAACACTGGCCTTTTCTAGCAAAAAAAAAGTTTAAAAAGTTCT
TTTTAAATCACAATATGCCCTGATCCCTCCAAAATTATAGCAGTGATCAT
GGAACAGAATTCAATTTTTTTTAAATTGTTAGAGCTTTATTTTTGGTTAT
AAGCATATATTTACATACATATAATTTGATTTTAAAAATAGCACAAATGT
ACACAAATTGTTTGCTATGCTTGAGATAATCTTTATCTAGTCATGTTTTT
CAAAATCCTTTTTTAAATCATTGATTTTAGAGAATTTCACTCTGAAATGA
TGTCAAACAACAGGGAGAAAGTATAATAGTTCATTCAGTCACTTTCCAGA
CATCTTTTGTTTACAGCTCATTATTAAGATTTTATCAGATGCTGGGATAT
TGGTTTTTCCTACTCCAAGGTTATAATTTAGCAAACTATTTGCCTAGCAG
TCCCTATTCTTTGTCTCTAGACAAAAAATTATATATTTTGAAGAAGTTTT
TTGTTATGTTAATTAATGTGTTATTTTTCATTGGGGCGTAAATATACAAA
CATATTTTGTAAAGCGAAAAATGTTAACTGTGTTN

ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGCCACTGTGCTATTATTTTCAAATGAG
GAGCCTGGCGTGAGATTGGTACTGGTCTCACAGCGTTTGCAGAATTCCAG
GTGTAATCAAGGAACTAATACGATTTTATGATGATGAAAACACCAGGCAC
AAACAGAATGGAAATAAGTAGATATTTGGGCCCTGAATTTAAACTGAGAC
AAATGTGCCTGTATGAAATGGACTATTATGGGTTTATCTTCAATTCATTC
CAGAAATACACTACAGTAGACCAGTGGACCAGATAATCACGTAGAGTTGA
AAGTGTGAACGATGTTGTGTAGCCATTCATTGCTTTTGCATTATGTAGCA
GGCAGAGAGAATTGTTAACCATTCTAAATGCTTGTAAACAGCAACCTCTT
CTGAATAAAAGTCTGCAGCATGCTTGCTAACACCCTGGAAGCCACCCTAT
GTCTGCCACAAAAGCAAAACCAAAGGAGAGACTCCTGTGGCGCTGGATTT
TAAAATTATGAGTAGTCATTTGATTATTCTTATTTAAATCAAGCATTGCC
TAAGGTACCTCCAGCCTATACACAGAAACACATTTTGCATGTTTCCTGCC
CTCTATAACTATTTTAGACTCTATATTTATCATGGTCAGTTCACTTGATT
TATATTTCAGGAACCACTGTGCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_c02.b1 MSMg01no183_c02.b1 CHROMAT_FILE:
MSMg01no183_c02.b1 PHD_FILE: MSMg01no183_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:04 2005
         (688 letters)



>mm_chr14_93489320_93490407
          Length = 1088

 Score = 1309 bits (677), Expect = 0.0
 Identities = 683/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaatcacacatgcaactataaatttgatcttctttccagaataaatcataaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 ggaattcaaatcacacatgcaactataaatttgatcttctttccagagtaaatcataaaa 263

                                                                       
Query: 64  taaaatttggtatacatattaagaagagtagtggatataatttcacagtaaaacactggc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaatttggtatacatattaagaagagtagtggatataatttcacagtaaaacactggc 323

                                                                       
Query: 124 cttttctagcaaaaaaaaagtttaaaaagttctttttaaatcacaatatgccctgatccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttttctagcaaaaaaaaagtttaaaaagttctttttaaatcacaatatgccctgatccc 383

                                                                       
Query: 184 tccaaaattatagcagtgatcatggaacagaattcaattttttttaaattgttagagctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccaaaattatagcagtgatcatggaacagaattcaattttttttaaattgttagagctt 443

                                                                       
Query: 244 tatttttggttataagcatatatttacatacatataatttgattttaaaaatagcacaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatttttggttataagcatatatttacatacatataatttgattttaaaaatagcacaaa 503

                                                                       
Query: 304 tgtacacaaattgtttgctatgcttgagataatctttatctagtcatgtttttcaaaatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtacacaaattgtttgctatgcttgagataatctttatctagtcatgtttttcaaaatc 563

                                                                       
Query: 364 cttttttaaatcattgattttagagaatttcactctgaaatgatgtcaaacaacagggag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttttttaaatcattgattttagagaatttcactctgaaatgatgtcaaacaacagggag 623

                                                                       
Query: 424 aaagtataatagttcattcagtcactttccagacatcttttgtttacagctcattattaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaagtataatagttcattcagtcactttccagacatcttttgtttacagctcattattaa 683

                                                                       
Query: 484 gattttatcagatgctgggatattggtttttcctactccaaggttataatttagcaaact 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gattttatcagatgctgggatattggtttttcctactccaaggttataatttagcaaact 743

                                                                       
Query: 544 atttgcctagcagtccctattctttgtctctagacaaaaaattatatattttgaagaagt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atttgcctagcagtccctattctttgtctctagacaaaaaattatatattttgaagaagt 803

                                                                       
Query: 604 tttttgttatgttaattaatgtgttatttttcattggggcgtaaatatacaaacatattt 663
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttttgttatgttaattaacgtgttatttttcattggggcgtaaatatacaaacatattt 863

                                    
Query: 664 tgtaaagcgaaaaatgttaactgtg 688
           |||||||||||||||||||||||||
Sbjct: 864 tgtaaagcgaaaaatgttaactgtg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_c02.g1 MSMg01no183_c02.g1 CHROMAT_FILE:
MSMg01no183_c02.g1 PHD_FILE: MSMg01no183_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:04 2005
         (642 letters)



>mm_chr14_93627964_93629005
          Length = 1042

 Score = 1210 bits (626), Expect = 0.0
 Identities = 638/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccactgtgctattattttcaaatgaggagcctggcgtgagattggtactggtctcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 842 agccactgtgctattattttcaaatgaggagcctggcgtgagattggtattgctctcaca 783

                                                                       
Query: 61  gcgtttgcagaattccaggtgtaatcaaggaactaatacgattttatgatgatgaaaaca 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gtgtttgcagaattccaggtgtaatcaaggaactaatacgattttatgatgatgaaaaca 723

                                                                       
Query: 121 ccaggcacaaacagaatggaaataagtagatatttgggccctgaatttaaactgagacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ccaggcacaaacagaatggaaataagtagatatttgggccctgaatttaaactgagacaa 663

                                                                       
Query: 181 atgtgcctgtatgaaatggactattatgggtttatcttcaattcattccagaaatacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 atgtgcctgtatgaaatggactattatgggtttatcttcaattcattccagaaatacact 603

                                                                       
Query: 241 acagtagaccagtggaccagataatcacgtagagttgaaagtgtgaacgatgttgtgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acagtagaccagtggaccagataatcacgtagagttgaaagtgtgaacgatgttgtgtag 543

                                                                       
Query: 301 ccattcattgcttttgcattatgtagcaggcagagagaattgttaaccattctaaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ccattcattgcttttgcattatgtagcaggcagagagaattgttaaccattctaaatgct 483

                                                                       
Query: 361 tgtaaacagcaacctcttctgaataaaagtctgcagcatgcttgctaacaccctggaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtaaacagcaacctcttctgaataaaagtctgcagcatgcttgctaacaccctggaagc 423

                                                                       
Query: 421 caccctatgtctgccacaaaagcaaaaccaaaggagagactcctgtggcgctggatttta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caccctatgtctgccacaaaagcaaaaccaaaggagagactcctgtggcgctggatttta 363

                                                                       
Query: 481 aaattatgagtagtcatttgattattcttatttaaatcaagcattgcctaaggtacctcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaattatgagtagtcatttgattattcttatttaaatcaagcattgcctaaggtacctcc 303

                                                                       
Query: 541 agcctatacacagaaacacattttgcatgtttcctgccctctataactattttagactct 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 302 agcctatacacagaaacacattttgcatctttcctgccctctataactattttagactct 243

                                                     
Query: 601 atatttatcatggtcagttcacttgatttatatttcaggaac 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 atatttatcatggtcagttcacttgatttatatttcaggaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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