Query= MSMg01no183_d04.b1 MSMg01no183_d04.b1 CHROMAT_FILE:
MSMg01no183_d04.b1 PHD_FILE: MSMg01no183_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:09 2005
(530 letters)
>mm_chr14_115827158_115828087
Length = 930
Score = 1009 bits (522), Expect = 0.0
Identities = 525/526 (99%)
Strand = Plus / Plus
Query: 5 gaattcatcaatagccttaggctgcatgggtccttctatggtggcctggctgaccagctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcaatagccttaggctgcatgggtccttctatggtggcctggctgaccagctt 264
Query: 65 tgtgttaatgaattggctgcccctgaaggaaggccctgctggaatggggaggaaatagtc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgttaatgaattggctgcccctgaaggaaggccctgctggaatggggaggaaatagtc 324
Query: 125 aaaaggtaagttctgtgtaagtcctgccttttcttccttgctttctctccctggaatgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaggtaagttctgtgtaagtcctgccttttcttccttgctttctctccctggaatgaa 384
Query: 185 aacggatgcttaatgttactttacagcacaggtttgaggttcaccccttcctttgacttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacggatgcttaatgttactttacagcacaggtttgaggttcaccccttcctttgacttt 444
Query: 245 cctcaataactttgatccttctttccatttcaactctgaagccaccatgtgttgaactga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcaataactttgatccttctttccatttcaactctgaagccaccatgtgttgaactga 504
Query: 305 aagttctttcttcatttccacctctatgcaatgtacacaccaaccccaacctttaaattg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagttctttcttcatttccacctctatgcaatgtacacaccaaccccaacctttaaattg 564
Query: 365 ttgtcttctctctagttggttctatttgtcaaatgtcttatttttttaagttcatgattg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttgtcttctctctagttggttctatttgtcaaatgtcttatttttttaagttcatgattg 624
Query: 425 tgaagagcctaggtgaaacctgaatactcaggcaatgatgagagactcagaggcaaaggg 484
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 tgaagagcctaggtgaaacctgaatactcaggcaatgacgagagactcagaggcaaaggg 684
Query: 485 gaagggagaaagggagaggagaagggagaagaagagggggaaggag 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaagggagaaagggagaggagaagggagaagaagagggggaaggag 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_d04.g1 MSMg01no183_d04.g1 CHROMAT_FILE:
MSMg01no183_d04.g1 PHD_FILE: MSMg01no183_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:09 2005
(637 letters)
>mm_chr14_115987315_115988351
Length = 1037
Score = 1139 bits (589), Expect = 0.0
Identities = 625/637 (98%), Gaps = 2/637 (0%)
Strand = Plus / Minus
Query: 1 acatggaacatacctgtaacactttataggttgctcacatggaacatacttataatggtt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 730 acatggaacatacctgtaacactttatgggttgctcacatggaacatacttgtaatggtt 671
Query: 61 cacactaccatactttcttttcaagatttcctagcgttccagggctactttatgaacata 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 670 cacactaccatactttcttttcaagatttcctagcattccagggctactttatgaacata 611
Query: 121 ggaagggttttctagatagtgaaataagtggtaatggctaagaaactcccaaaattctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ggaagggttttctagatagtgaaataagtggtaatggctaagaaactcccaaaattctta 551
Query: 181 agctgacagatcactttatctaagcaagatttaaaataggcccttttcctttcctacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 agctgacagatcactttatctaagcaagatttaaaataggcccttttcctttcctacatt 491
Query: 241 ggggtagagtagttgtaactgggacccaaattgagatgtcattataacatatgactaacc 300
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 490 ggggtagagtagttgtaactgggacccaaattgagatgtcattagaacatatgactaagc 431
Query: 301 taaagaggttagaaaggtgggatttatgtcatcgagtgtgacctgtaagtcactagttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 taaagaggttagaaaggtgggatttatgtcatcgagtgtgacctgtaagtcactagttca 371
Query: 361 gtgcggcagccttgaacccttacgtccttttgtcaacctagtaccaaagccatagttgtg 420
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 370 gtgcggcagccttgaacccttacgtccttttgtcaacctagaaccaaagtcatagttgtg 311
Query: 421 ccctcatccttatctcagtacttactctggtgaattatcaagagcctttctccaacatca 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 310 ccctcatccttatctcagtacttattctggtgaattatcaagagcctttctccaacatca 251
Query: 481 cttcatcacttttctctaatatcatttcatctttgaaatttcagagtagttttttttttt 540
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 250 cttcatcacttttctctaatatcatttcatctttgaaatttcagagtag-tttttttttt 192
Query: 541 atttaattttttttttatcgccctcctggtctgccctgtgtctgctccacatcccatacc 600
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atttaa-tttttttttatcgccctcctggtctgccctgtgtctgctccacatcccatacc 133
Query: 601 tcctcaccaccccaatcttcaagttgtatacatttaa 637
|||||||||||||||||| |||| |||||||||||||
Sbjct: 132 tcctcaccaccccaatctccaagatgtatacatttaa 96
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
