BAC Information

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BAC

Clone NameMSMg01-183F09
Chromosome14 (Build37)
Map Location 27,592,257 - 27,592,533
singlet/doubletsinglet
Overlap geneDnahc7c
Upstream geneAnxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik, Slmap, LOC100039353, LOC665279, A630054L15Rik, Arf4, E430028B21Rik, 4921531P07Rik
Downstream geneAsb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370, Erc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183F09.T7 (MSMg01no183_f09.b1)MSMg01-183F09.TJ (MSMg01no183_f09.g1)
ACCAG375961AG375962
length733727
length of high quality
(start - end)
73 (45 - 117)281 (76 - 356)
definitionCHROMAT_FILE: MSMg01no183_f09.b1 PHD_FILE: MSMg01no183_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:19 2005CHROMAT_FILE: MSMg01no183_f09.g1 PHD_FILE: MSMg01no183_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACGCAGTTGAATCCTTCTCAAGAGGCTGTTTTACGGGAACACTTCA
TTACCACCGTTCCCCAGTTGAACAGGTCTGAATCCACACCGGATCCTTCT
CAGCAGACTGTTTTACGGAAACCTTTATGACCGTGACCCGCAGTTCTGGT
TCCAGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGGGT
TACTTGTCCCAGGATTTCTCGTCCCGAGTCTTCTTGTCCTCCCGGTTCTC
AGCACCAACTCTTACCCGCGTTTCACGACCGGCCAGTAAGAACACAACTG
ACCGTAATCTTCTTCTTCAAACGCTCTATTGCTTACATCTTCAGGAGCCT
CATAGTGAGAGAGCAAGACCAAGAAAAATAACAAGAACAAGAAAGCATGA
GCAAGAGAGAGAAAAATGACGATCAAGAGAGAGAAGTAGAACGAGAATGC
CCGAGAGACAATCGGACTTTGATTGTATGACACAGCAACATAACGAGAGC
ACGTAGAACAACAAGAGCATGAGAGAGAATAAGCACCAGATCCGGAAAGC
ACGATAGAGAATACCAGATAGAGAGAAAGAACGGCCGACCCCCGTTCCCT
TTTAAGGAGAATTATCCTCCCGACTAGGACGTATTAACTCCCTTGATTGG
CTTGCAGCCCATCGGGCCCAGTTGGCTTCATAA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAATTACATATCCACCTTATAAAA
TAAGTTATATGCGCATAATGCCTATAGCTGCTTGGATGGTTCCCTATAAA
GACAAGGTCCTAAACTTTATACTCCATTAGTTTCACAGTACAACCATCTC
TGAAAATGGGACCATTAGGTGCCCAAGTGGATTTCAGAATTGATGCCTAA
CAATGTAGGCTGTGTTTACTGTACTTCTGAGACAGGATCTTCTAACCTGG
CCCAGATTCGGAACATTTCTACCTTGATGCTCAAAGTAGGATTAGAGGTG
TGCATGTTTTCTCTGCTTCTCTGCCCTTTGCTGTAAGCTACTGAGAAGAG
GGGTTATTTGCTCCCTAGCCTTCCAATTATAAAAAGTTTATTGCTTCTTT
TCGTTCTTCAGTTTGATTTAAAATAACTTTAAACTATGGCAAATAATCAA
TACTCTTACCCATGTCGAACAATCATCATTTCATATGTCTGAATAATTTT
TTCAAGAAAAAATTTAACAGGCTGAAGATTATGTGTTTGGCAGGTTTCAT
GTGCACATTCCAAAAATTCCTGAAATACTATACAAATGAAATGTGTTTCT
ACTAAGTGTCATTACAACTTATGTCACACAGAATGAATTTTTCAAATTAT
AAAGAATAAATACAATTAACATGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_f09.g1 MSMg01no183_f09.g1 CHROMAT_FILE:
MSMg01no183_f09.g1 PHD_FILE: MSMg01no183_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:19 2005
         (281 letters)



>mm_chr14_27592057_27592737
          Length = 681

 Score =  460 bits (238), Expect = e-134
 Identities = 268/278 (96%), Gaps = 2/278 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattacatatccaccttataaaataagttatatgcgcataatgcctatagctgcttgg 60
           ||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||
Sbjct: 477 aaaattacatatccaccttataaaataagttatatgcacaaaatgtttatagctgcttgg 418

                                                                       
Query: 61  atggttccctataaagacaaggtcctaaactttatactccattagtttcacagtacaacc 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 atggttccttataaagacaaggtcctaaactttatactccattagtttcacagtacaacc 358

                                                                       
Query: 121 atctctgaaaatgggaccattaggtgcccaagtggatttcagaattgatgcctaacaatg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 atctctgaaaatgggactattaggtgcccaagtggatttcagaattgatgcctaacaatg 298

                                                                       
Query: 181 taggctgtgtttactgtacttctgagacaggat-cttctaacctggcccagattcggaac 239
           |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||| ||
Sbjct: 297 taggctgtgtttactgtacttctgagacaggatatttc-aacctggcccagattcgggac 239

                                                 
Query: 240 atttctaccttgatgctcaaagtaggattagaggtgtg 277
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atttctaccttgatgctcaaagtaggattagaggtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)