BAC Information

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BAC

Clone NameMSMg01-187D08
Chromosome14 (Build37)
Map Location 72,833,124 - 72,833,434
singlet/doubletsinglet
Overlap geneLOC668482
Upstream geneLOC100043136, LOC668477
Downstream geneLOC675957, Fndc3a, LOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187D08.T7 (MSMg01no187_d08.b1)MSMg01-187D08.TJ (MSMg01no187_d08.g1)
ACCAG378640AG378641
length729761
length of high quality
(start - end)
315 (47 - 361)287 (86 - 372)
definitionCHROMAT_FILE: MSMg01no187_d08.b1 PHD_FILE: MSMg01no187_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:27 2005CHROMAT_FILE: MSMg01no187_d08.g1 PHD_FILE: MSMg01no187_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCCATGGGGTAGCACTTACTATCCTTTCCCAAGTCACATCCAT
GGGCTGTGATGAGCTCATTTGCTTATGTAGACTACTTATGTTTATTATAT
TGGGGAAGATGTGGCACATGCATAGAGGTCAGAGATCAACTTGTAGGGAA
CAGTTCTCTCCTTCTACCATGTCAATTCCAGGGACTGAAGTCAAATTGTT
GGACTTGGTAGCAAGTATCCTTCACGTTGAACCATCCGACTGACTCAATT
TATCTGTGTGTAGTCTATTTCCTTTTATATGCTTTTAATGATGGTAAGTG
GTAATGGCTGTTGACTTCCCTACCTTCANCCCTGATAAATGCTATCTAGT
TTGATCCTCACAACAGCCCCCCGAAGTAGATACAGACAGTTGCTTACTTG
TTAAGGTGAGGACACTGAGTCTCATAGAGGTTAAGTAACATGGAGTATGA
ATATATGAGTCTCACGCCCTGAGCATACTGATGGTTGGCCGACTGTTCCC
TCTAGCCTTCCATGGAATCCATAATCAGCCTCCTTTTCAGAAGCACCCAC
TATGGGGGTCCCTCAGTGAAGTGGTCTACAGAGCGAACTAATAACTGATT
TCTTCTGCCGGCTTGTCGAGAGTCTTGCATCTCTTTCCTATACGAGTTCT
TACATGACTCTTTGATAGGTTTCCTCTTT
TTTATTTCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTC
TACCATCATCATGAGATATGCTTTTAAATCCAGGCCTACCTTTTCAGGTG
TGTTAGAGTGTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGAT
GGTGAGTGGTCCTGGTTTCTGTTAGTAGGATTCTTACATTTACCTTTCGC
CATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGAT
TGTTCCTCTGTTGATTTTGTTACCCTCAATCAGCAGGTGTGGGAGACAAG
CTCTCTCCTCTGAGTTTCAGTGTTCAGAGCAGTCTCTGCAGGCAAGCTCT
CCTCTTTCGGGGAAGGTGTACAGCCACCCGGTGTTTGGACCTCCCCCTGG
CTGAAGGTGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTT
GTTCAGTAAGGTGGCCGGTTGTCTGGAGTCGAAGATGTCGCCGCCTTACA
AGCTCTGCGGTTCTCGCCAGGCAGGTGTTCTGCCTTCTGGATTCGATCAT
GGTGCCTTTCTCTCAGCTTCTGTTATTCTCTCTCGTACCAGAAATGTTTG
GTCTCTGTATTCCCCTCGGTCACCCGTGCTTTCCGCCCCCTGTCGCGTCC
TGCAACCTCGAATGCTCTTTTCGCCGCCTGTGATCCTTTTCCTTTTCGCC
GTTCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_d08.b1 MSMg01no187_d08.b1 CHROMAT_FILE:
MSMg01no187_d08.b1 PHD_FILE: MSMg01no187_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:27 2005
         (315 letters)



>mm_chr14_72833119_72833833
          Length = 715

 Score =  571 bits (295), Expect = e-167
 Identities = 307/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccatggggtagcacttactatcctttcccaagtcacatccatgggctgtgat 64
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 316 gaattcttccatggggtagcacttactatcctttcccaagtcacacccatgggctatgat 257

                                                                       
Query: 65  gagctcatttgcttatgtagactacttatgtttattatattggggaagatgtggcacatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagctcatttgcttatgtagactacttatgtttattatattggggaagatgtggcacatg 197

                                                                       
Query: 125 catagaggtcagagatcaacttgtagggaacagttctctccttctaccatgtcaattcca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 catagaggtcagagatcaacttgtagggaacagttctctccttctaccatgtcaattcca 137

                                                                       
Query: 185 gggactgaagtcaaattgttggacttggtagcaagtatccttcacgttgaaccatccgac 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 136 gggactgaagtcaaattgttggacttggtagcaagtatccttcacgttgaaccatctgac 77

                                                                       
Query: 245 tgactcaatttatctgtgtgtagtctatttccttttatatgcttttaatgatggtaagtg 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tgactcaatttatctctgtgtagtctatttccttttatatgcttttaatgatggtaagtg 17

                      
Query: 305 gtaatggctgt 315
           |||||||||||
Sbjct: 16  gtaatggctgt 6


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)