BAC Information

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BAC

Clone NameMSMg01-187F06
Chromosome14 (Build37)
Map Location 66,063,556 - 66,063,841
singlet/doubletsinglet
Overlap genenone
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
Downstream geneElp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-187F06.T7 (MSMg01no187_f06.b1)MSMg01-187F06.TJ (MSMg01no187_f06.g1)
ACCAG378714AG378715
length797765
length of high quality
(start - end)
280 (100 - 379)289 (87 - 375)
definitionCHROMAT_FILE: MSMg01no187_f06.b1 PHD_FILE: MSMg01no187_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:36 2005CHROMAT_FILE: MSMg01no187_f06.g1 PHD_FILE: MSMg01no187_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:02:37 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GTTGTTTTCCTTTTTTTTTTTTTCTTCCTCCCCGAGNTTTTATAGNNGGG
GAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGTATTCAAAAGTGGGGGCTGGAGAAATGGCTTAATAGTTAAGAGCAC
TGGCTACTCCTCCAAAGGTCTCGGGTTCAATTCATAGCACCCACATGGAG
GCTCACAACTGTCTGTAACTCCAGTTCCAGGGAATCTGACACCCTCACAC
CAGTGCACATAAAATAAAATTGAATAAATTATTTTTCAAAAAAGATGTAA
AAGTAGAGGGCTGGAGGTGTAACTCAGTAGCTGGAATACTTACCTAGTAC
GCATGAAGTCCTGGGTTCAATCCCCAGCTCAGTCACAAACTGGTCAGAGT
GGTTTATACCTGTAATTTTTGTACTGCCCCCCCCCCCCCGCAGGGCGATC
TGAACTTCCAGGTTATCCCCGCCCCCACAAAAAGATCAAGGAAATTCTGG
GCTAGGTGAGACCCTGTCGCCCCCATCATCAACGAAGACATTATTAAACA
TTTAGGTGTTGAGCTTTGTTGGCACTCACTTTTAATTCCACCCCCATAAG
CCACATTTAGGTGTATTTTTGTTAGTCCCAGGTTAGCTCGCTCTATATAA
TTTCGTTTATTTCCCGCCTTATTATTTTTTTTTCCACCCTCCCTTTTTTT
TCCCCTTCTTTTCCCCGTTTTTTTTCCCCGCTTATCACCCCTTTCCTATC
CCCCCATTTTTTTTCCTTTTCCCCGCCCTTACACTTTTTCCCTCTTT
TTTTTTTTTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCGGTGATCCAC
TCTTGGGATGCTAGTGGGTCATTATGCTCAGGTCCAACAGCCTTGTGTGG
TCCACTTCTGCAGCAGAAAAGGACTGGTGCCACTGACTGTAGGGCAGTGG
ACCAAGCCACCAGACAGAAGAACTGGTAAGCAAGTTCAGAACCCTGATAA
ATTTTATAGTTGAGAATGGCAGGAGTTCAAACTAGCTCCTAACCAGGTTC
CTGGGCTGGAGTGTGTGACCACATCACCCTACTAAGAGGACCATGACAAC
CAGTCACATAGCACAGAACCTATATTTCTCCATGCTAACGAGGTATCTGG
ATAGTCCCCCTTCCTGAGCATCCCTCCCCACAAAAGATATATAGTCTCTA
GTTCACCCTTAGTAAGACATATGCATCTTCATCTGCCATGAATGAAAGTT
TGGACAAGCAAGGACCATCACCTTCATCAAGGACTACTGTGGGTGGAGGC
CTTAGCCATGCCTAAGTCCCCCATAGGAGCCCCTCCTTACTCCTGGTGCT
CACTTGTAGCTAAGCCAGATTCCCCCAGTTCTGGTCTCATCTTAAGTCTG
CACACTCTTTTTTCCCAACTCCTAAAGATCTTTAGCCATGTCTCATGAAC
GACGTCCATCACCATTTTTATGCGTCGTACGGAACATCCTGTTCCTTCTC
CACGATTCCCTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no187_f06.g1 MSMg01no187_f06.g1 CHROMAT_FILE:
MSMg01no187_f06.g1 PHD_FILE: MSMg01no187_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:37 2005
         (289 letters)



>mm_chr14_66063356_66064044
          Length = 689

 Score =  507 bits (262), Expect = e-148
 Identities = 280/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccggtgatccactcttgggatgctagtgggtcattatgctcaggtccaacagccttgt 60
           |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 486 acccggtgatccactcttgggatgctagtgggtcatcatgctcaggttcaacagccttgt 427

                                                                       
Query: 61  gtggtccacttctgcagcagaaaaggactggtgccactgactgtagggcagtggaccaag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtgctccacttctgcagcagaaaaggactggtgccactgactgtagggcagtggaccaag 367

                                                                       
Query: 121 ccaccagacagaagaactggtaagcaagttcagaaccctgataaattttatagttgagaa 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 366 ccaccagacagaagaactggtaagcaagttcagaaccctgataagttttatagttgagaa 307

                                                                       
Query: 181 tggcaggagttcaaactagctcctaaccaggttcctgggctggagtgtgtgaccacatca 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 306 tggcaggagttcaaactagctcctaaccaggttcctgggctggagtatgtgaccacatca 247

                                                         
Query: 241 ccctactaagaggaccatgacaaccagtcacatagcacagaaccta 286
           ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 246 ccctactaagaggaccatgacaaccagtcacatagcatagaaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)