BAC Information

Click to search

BAC

Clone NameMSMg01-189D04
Chromosome14 (Build37)
Map Location 114,091,349 - 114,091,558
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043509, Tpm3-rs7, LOC100043510
Downstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189D04.T7 (MSMg01no189_d04.b1)MSMg01-189D04.TJ (MSMg01no189_d04.g1)
ACCAG379964AG379965
length701741
length of high quality
(start - end)
209 (131 - 339)628 (90 - 717)
definitionCHROMAT_FILE: MSMg01no189_d04.b1 PHD_FILE: MSMg01no189_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:06 2005CHROMAT_FILE: MSMg01no189_d04.g1 PHD_FILE: MSMg01no189_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGAGCAGTTAAGTACTG
TGGCTCAAACATCCACCCCTGTCTACTCACTCTTACCTGTGGCATGAAAA
TCACGCTTTGGAAGCCTGGTAGAACAACATAATTAAATGCAAACAATATT
CAAATATACACTGGCAGCTAGAGCAACTTCTCATTGTGATGTAATCCAGA
CAAAACTTTGTTTGTTATAATAGATACAATTTATGAAATGTTCCATAGTT
GTTTTCCCCCACCCCCCAAAAAAGAACTAAACTATACACACATTTACCAA
GGCTTTTTCTACTGTCCCATACGCCTCTACCAGTTGCCTGCCTCTCTCAC
CCTCTACATTTAAAGAATATTATATAAACATTTTTTCCTTTTCCTATTTA
AACCCTGCATTGAAACTGTGCTCTTCATTAAAGACCATACTTTAAAATAT
TGACTGTCCTTCAAGTTATTATAACTCATTCATTGTAATCATTATAACTT
TTTCCTTTTTATATTTGTCTCTAATAGTAATAATCCAACTATTTTTAACA
ATGTATAATACTCTATTGTTTAACTACACTTCTATGAGTTTAGTCATATT
ATTGCTCCTGAAGGTTAGATGATTTTCTTGCTTGTTTTTGTGTTTCATTT
AAACAGTGAATATTTTATGTCGACATCTCCTAGTGTAAATATGTTATTTT
N
CCTTTTTTTCCTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCT
CTGAGTCCCACTTTTAAATGGGGTTATTTGATTTTCCGGAGTCCACCTTC
TTGAGTTCTTTTTATATATTGGATATTAGTCCCCTATCTGATTTAGGATA
GGTAAAGATCCTTTCCCCATCTGTTGGTGGCCTTTTTGACTTATTGAAGG
TGTCTTTTGCCTTACAGAAGCTTTGCAATTTTTTGAGGTTCCATTTATCG
ATTCTCGATATTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCC
CCCTGTGCCCATATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATAAGTT
TCACTGTCTCTGGTTTTATGTGGAGGTCCTTGATCCACTTAGATTTGACC
TTAGTACAAGGAGATAAGTATGGATCTATTCACATTCTTCTACATGGTAA
CTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTTCACT
GGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGG
TTCATTTCTGGGTCTTTGAGTCTATTCCATTGTTCTACTTGTCTGGTGTT
ATACCAGTACCATGCAGTGTTTTTTTTTTTTTTCATTATTTTTTTAATTA
GGTATTTTCTTCATTTACATATCCAATGCTACCCCAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_d04.b1 MSMg01no189_d04.b1 CHROMAT_FILE:
MSMg01no189_d04.b1 PHD_FILE: MSMg01no189_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:06 2005
         (209 letters)



>mm_chr14_114091149_114091758
          Length = 610

 Score =  368 bits (190), Expect = e-106
 Identities = 205/210 (97%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaaatgcaaacaatattcaaatatacactggcagctagagcaacttctcattgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aattaaatgcaaacaatattcaaatatacactggcagctagagcaacttctcattgtgat 351

                                                                       
Query: 61  gtaatccagacaaaactttgtttgttataatagatacaatttatgaaatgttccatagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtaatccagacaaaactttgtttgttataatagatacaatttatgaaatgttccatagtt 291

                                                                       
Query: 121 gttttcccccaccccccaaaaaa-gaactaaactatacacacatttaccaaggctttttc 179
           |||| |||||||||||||||||| |||||||| || |||||||||||||||||||| |||
Sbjct: 290 gtttccccccaccccccaaaaaaagaactaaattaaacacacatttaccaaggcttgttc 231

                                         
Query: 180 tactgtcccatacgcctctaccagttgcct 209
           ||||||||||||||||||||||||||||||
Sbjct: 230 tactgtcccatacgcctctaccagttgcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 610
Length adjustment: 9
Effective length of query: 200
Effective length of database: 601
Effective search space:   120200
Effective search space used:   120200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)