BAC Information

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BAC

Clone NameMSMg01-189P21
Chromosome14 (Build37)
Map Location 38,600,201 - 38,600,857
singlet/doubletsinglet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871
Downstream geneLOC382872, Nrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189P21.T7 (MSMg01no189_p21.b1)MSMg01-189P21.TJ (MSMg01no189_p21.g1)
ACCAG380486AG380487
length764732
length of high quality
(start - end)
320 (46 - 365)657 (76 - 732)
definitionCHROMAT_FILE: MSMg01no189_p21.b1 PHD_FILE: MSMg01no189_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:06 2005CHROMAT_FILE: MSMg01no189_p21.g1 PHD_FILE: MSMg01no189_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCAGACCTTTAAAGAAAACCTAATATCAATACTCTCCAAACTC
TTCCACAAAGTAGAAACAGAAGGAAGACTATCCAATTCATTCTATGAAAC
CACAGATATGCTGCATATTCTCCCTTGGAGATGGACCAGTTTCTGTCTAA
TCAGGAACTTGTCACAATTTCTATTCATAAAGGACTTCATAAGAGAATTT
TTCTACTTCTATCATGTTTAATGTTCCAAATGGCTTTTAAAAACTGTTTT
GCATATTACTTTTAGCTTCAGAAGCTATCATATATACGTAAGAAGCATTT
AACTATTATAAATTATTTTTATGACTCCCCCCCCTCAATACTGAGTTATA
TGTTTTAAAATAAATTTTATTAGTTTGTTTAAAAAATAAACTTTAAAAAA
GAAAGCATGCATACAACTTAGTCTCTGCTTGGTAAAATTCTTTTGCAGTT
TACCATAATCCTTTCTGACTAGCTCAAGTATTCCAGAAAAATTGTGCTGT
ACTAGAGAGCTCAGGCGAGTTAATGGTCTGCCCATGAAAAAAGAATGTTC
CTCGTGTTCCACTTTGCTTTCCTTCACCGGCTCATTCTGACAGTGCCAGG
CACAGAAAGAGGTCTTTGGAACGTACCACCTGTCTGAGGATGAAGGACAA
GCTCCCCTGTTTGGCTTGCATTCTAGAAATACGTGCAACTGATTCACAAA
TACTTCACAGGACN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTCACTGCATAGCATTTTCCAT
CTATGTGCCTTTATACTGACCTTCACCATATAGGAGAGAACCACCAACAT
CCTGCTATAGCAGGAGCTATTGCAAAGGGTAGAGTCATATCAAAATACTG
ATGGCAAGTTACTATTCACAGAATAAAATAGTCTTAGTAATATTATGACA
TTGGTCTCTTTTTTATTACTGTGGCAACACTCCACATTACTTTTATTGCC
ACACCACAACCTGTAAGAAGAAGAGTCTATCTTGTTTTCTTTTTATATGG
TCTGCCAGCTTTTGATCTTTATTAGTATAAATTAATTTTAGATTAAGTCT
GTCTAATTCTGCAAAATGCCCACCATTGAAACATTTCCTGGAATTCTGGT
GTCAAGGACTCTTCTGAGGAGAAATGGATTTCTTATTATATTGATTCATA
TGCCTAATGAAGTAAAGCAGGCCTTGTCATAAAGTTTAAAGCCATGCCAT
ACAGTTGTTAGAAAATGATGGGTTCCTACTTTCATTATCCTATTTGAATT
TGTGACTTGGTATTCCAATATTACAAATATATTACTCTTTTATATGTCAG
TAAAGACTAATGTATTATTTTATTATGTGAATAGTAGCATGCCATCAATT
TTGATATGTACTCTTCCCTTTTCTATATCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_p21.g1 MSMg01no189_p21.g1 CHROMAT_FILE:
MSMg01no189_p21.g1 PHD_FILE: MSMg01no189_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:06 2005
         (657 letters)



>mm_chr14_38600001_38601057
          Length = 1057

 Score = 1232 bits (637), Expect = 0.0
 Identities = 652/657 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttcactgcatagcattttccatctatgtgcctttatactgaccttcaccatatagga 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttcactgcatagtattttccatctatgtgcctttatactgaccttcaccatatagga 260

                                                                       
Query: 61  gagaaccaccaacatcctgctatagcaggagctattgcaaagggtagagtcatatcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaccaccaacatcctgctatagcaggagctattgcaaagggtagagtcatatcaaaa 320

                                                                       
Query: 121 tactgatggcaagttactattcacagaataaaatagtcttagtaatattatgacattggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgatggcaagttactattcacagaataaaatagtcttagtaatattatgacattggt 380

                                                                       
Query: 181 ctcttttttattactgtggcaacactccacattacttttattgccacaccacaacctgta 240
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 ctcttttttattacggtggcaacactccacattatttttattgccacaccacaacctgta 440

                                                                       
Query: 241 agaagaagagtctatcttgttttctttttatatggtctgccagcttttgatctttattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagaagagtctatcttgttttctttttatatggtctgccagcttttgatctttattag 500

                                                                       
Query: 301 tataaattaattttagattaagtctgtctaattctgcaaaatgcccaccattgaaacatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataaattaattttagattaagtctgtctaattctgcaaaatgcccaccattgaaacatt 560

                                                                       
Query: 361 tcctggaattctggtgtcaaggactcttctgaggagaaatggatttcttattatattgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcctggaattctggtgtcaaggactcttctgaggagaaatggatttcttattatattgat 620

                                                                       
Query: 421 tcatatgcctaatgaagtaaagcaggccttgtcataaagtttaaagccatgccatacagt 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tcatatgcctaatgaagtaaagcatgccttgtcataaagtttaaagccatgccatacagt 680

                                                                       
Query: 481 tgttagaaaatgatgggttcctactttcattatcctatttgaatttgtgacttggtattc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgttagaaaatgatgggttcctactttcattatcctatttgaatttgtgacttggtattc 740

                                                                       
Query: 541 caatattacaaatatattactcttttatatgtcagtaaagactaatgtattattttatta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caatattacaaatatattactcttttatatgtcagtaaagactaatgtattattttatta 800

                                                                    
Query: 601 tgtgaatagtagcatgccatcaattttgatatgtactcttcccttttctatatcagc 657
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 801 tgtgaatagtagcatgccatcaattttgatatgtactcttccctttgctatatcagc 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)