BAC Information

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BAC

Clone NameMSMg01-190G11
Chromosome14 (Build37)
Map Location 22,436,912 - 22,437,216
singlet/doubletsinglet
Overlap geneMyst4
Upstream geneUsp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk
Downstream geneEG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075, EG435392
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190G11.T7 (MSMg01no190_g11.b1)MSMg01-190G11.TJ (MSMg01no190_g11.g1)
ACCAG380761AG380762
length742759
length of high quality
(start - end)
315 (58 - 372)280 (130 - 409)
definitionCHROMAT_FILE: MSMg01no190_g11.b1 PHD_FILE: MSMg01no190_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:38 2005CHROMAT_FILE: MSMg01no190_g11.g1 PHD_FILE: MSMg01no190_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCNCCGCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACTCATTACATAGCACACAAAGAACATTTACTA
CTAGGACAGACGAAGAACATCCACTGCCATCCAGTTCCTGGGTCACTGAG
TTTCAATTCTAAAAGCAGGGGAACAAGCATGGAGTTTGGGAGCTGAAGGA
GAGACTCAGGCAGGACATTAGGAAGCCACCCTGGGCAGGTTCCCTCGGCT
TGCTTGAACAATGTGTTGCTCCACACAACCCTGGGCACTTTTTTTTTTTT
TTTTTTTTACCCAGCAACATTCTGCACGTCCAGTTTGCAGAAAGCCCCAG
AGGAACAAGACCAGGATTCCATGTTTTTATTCACCCCGCCCCCTGAGGCT
CTGGAAAGCAGCTCCATTTCAAAACTAATGGCCCTTTTACACACAACCCC
AAGGAGATCTCCAAACTTGATTATTATTTCTTTTTTTAAAATCTGGTCTT
TAAATAGCAAGAACATTAGAAAATCCCATGTGAGAGAACTTATAACCAAG
CTGCAAAGGGAAGCCCGAGGGGTAATAAAGAAAGCAGATTCTGTAATTTC
AAAACTGTTTTATAATTTCCTGACTTTGGCAGCTTCATTGTTTAAATATG
TATTTTGGGTTCCTGCCAAAAAGGTTCTCCTCCCTAAAGCTTAACAGGTG
CTTCATAAAATTCCACTCACCAGGATAGTTGCCTTTTTGAAG
NTTTCCCCCTTCCCCTNNTTTTTTTTCTTCCCTTCCTCCTTTTAAAANNN
NAAACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTTAAGTGACATCTACATA
AGTTTTGCTTTGTCACTACTCTTTATGGACAGATAATTCCTTGGCCCCTT
TCTTTACAGTCACAGTATTAGCTGGGTGAGGTCTGATCTGAGGGCAGCAG
CCCTTTTATCCCATTTCCCTGATCTCTTTTAACACAGGCTTTGGTACCAA
CACTGCATTTCCTGGCCTCCTTTGGCTCTCCAACTACAGTTTACTTTTCT
TTTTGCCCCACTTGCTCTTTTTCTTTGTAGACCAGCCTGAGTGATCACTA
ATTACTTTTTTTTTACCCCANACGGACCGCCTTCAAATCTCCTCTGCCCA
CAAAATTATCCAAAATTTAACCATCAAACAGATTCTTAGGACAAGGGCAA
AAAGCAGCCACATTATTTGCCAAAATGTTACAAGAATGGCCTGTATCCAA
GTTGCTAGTATTGTTTCCCTGTTCAGCTGGGTCTCCATAGTCCACACTGC
TCTCAGCCCTTCTGTCTTCCAAACTCCTGCCATAATGGCCCCACTTACAG
CATTCAACTACTTTCCTAGTCCATAGTCCCAACACCTCCCACTATCCTTC
CAAAACCAACATGGACAGCCCTGTCAAAACAATGACCTGGTGACTAGTGC
CCGGTACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_g11.b1 MSMg01no190_g11.b1 CHROMAT_FILE:
MSMg01no190_g11.b1 PHD_FILE: MSMg01no190_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:38 2005
         (315 letters)



>mm_chr14_22436786_22437500
          Length = 715

 Score =  559 bits (289), Expect = e-164
 Identities = 303/311 (97%), Gaps = 6/311 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactcattacatagcacacaaagaacatttactactaggacagacgaagaacatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 431 gaattcactcattacatagcacacaaagaacatttactactaggacagatgaagaacatc 372

                                                                       
Query: 65  cactgccatccagttcctgggtcactgagtttcaattctaaaagcaggggaacaagcatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cactgccatccagttcctgggtcactgagtttcaattctaaaagcaggggaacaagcatg 312

                                                                       
Query: 125 gagtttgggagctgaaggagagactcaggcaggacattaggaagccaccctgggcaggtt 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 311 gagtttgggagctgaaggagagactcaggcaggacgttaggaagccaccctgggcaggtt 252

                                                                       
Query: 185 ccctcggcttgcttgaacaatgtgttgctccacacaaccctgggcacttttttttttttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||      |||||||
Sbjct: 251 ccctcggcttgcttgaacaatgtgttgctccacacaaccctgggcac------ttttttt 198

                                                                       
Query: 245 tttttttacccagcaacattctgcacgtccagtttgcagaaagccccagaggaacaagac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tttttttacccagcaacattctgcacgtccagtttgcagaaagccccagaggaacaagac 138

                      
Query: 305 caggattccat 315
           |||||||||||
Sbjct: 137 caggattccat 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)