BAC Information

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BAC

Clone NameMSMg01-194L08
Chromosome14 (Build37)
Map Location 102,136,962 - 102,137,249
singlet/doubletsinglet
Overlap geneLmo7
Upstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3
Downstream geneLOC100043795, LOC545567, LOC669278
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194L08.T7 (MSMg01no194_l08.b1)MSMg01-194L08.TJ (MSMg01no194_l08.g1)
ACCAG383528AG383529
length727741
length of high quality
(start - end)
---288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no194_l08.b1 PHD_FILE: MSMg01no194_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:40 2005CHROMAT_FILE: MSMg01no194_l08.g1 PHD_FILE: MSMg01no194_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGCGCCTCTTCACCACATGACCGTGACCACCATGTTCGTCCACA
GATGCGATAGAGTGTCTATTTATACCCCCTCCTCTAAGCCCAAGAAGCTC
TTGAAGGCCATCCTGTCTGGAATTAGAGGTCTAGTACCATAGTCTGAAGA
TTCATCTGGAGGATTTTGATGCGAGCTAAAAAGATCAAAGCACTGAAAGT
TGAGTTGACCAGATGGCTCATTGGTTCAAGGCGCTTGGCAGAAAAGCCTC
ATGCTATCCGAGTTTGAGTCTTAGAATCCATAGAAGAATGGAAGACACTC
TTCTCTATAAAGTATTCTTCCTATCGTCCATACACGTGTCATGGTGGGCC
CACACATGTATGTCTTATCCACACATAATAATGATAATTGTAGAATATTG
AAAGCCACTGACTGCCCTTGAAACCACACTCATTAAAGCTCCGCCCAGAC
CCGAGTGATAGCTTCGGCAAAATTGGCTACTTTTGTATAAAGAGAAGTAA
ACCGAAACGTAATTCATCTAGGCTTAACCCAACTTGAGTTTAAGAATAAG
CTATACAAAGCTCTTAGAAGCTCACAGTTAGTGAAAAGTCTGCAGCTACT
GACAAGGGATTTCAAGTGTTGACTAATAATTAAGAGAACACTCGATGAAG
TTCACTGTGCTTAAGTCTGCTTTCGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATTCTTGTGGAGGTAGGGGG
CAGATTCTGAAATAGGAACCAGGGCAGCAATGTTAAGAGAATAACCCGAC
TCCAGGAAGCCTAAGCAGCAAGGTCAAGTTGTGAGGAATGGAAGGGTCCC
AGCACATTTGGATTCTTCTATGGGTGGATGAAAATCTAGAAGTGGGTGTG
CTCATAAAGTAATACAAAGGTCAACCTATATCTTCAGTGTGACGGTATCA
CCTAGAGAGTGGACCCCTTGGGTCAAAAGGTGATGAGCACCAGCTGGAAG
TGAATCTGGTACCTTTAGTATATCCGCGGACANTCCGCCCAAGGTTAGAA
GTCAGTGTTGGCTTCTTTCACCCAAATAAACAAATAAAAAAATGCCCTTT
TTCTCAGAACACTGGTTATCTTAACCATTCATGTCATAGTTGACTCCTTG
GGTTTTCTCCAGCGAGGAAGGTGAAGTCAAGACAAGGCGAGTTGCCTCAT
TTCAGCGATGCCACATAAGGCTATTGTGATTCACACAGTTGGGGGCACTT
CTTCTGCCATTGGAAAAGCAAGAATATCCTCTCGTTTATCTGCTCTTTAG
ATCAAGTGAATCCTTGCCCTTTTGCCGCGTTTGTCTGCATCGTTTTCCTT
TAATATTACCATTCTTTATTTTCTGCTAACTCTTTCCATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_l08.g1 MSMg01no194_l08.g1 CHROMAT_FILE:
MSMg01no194_l08.g1 PHD_FILE: MSMg01no194_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:40 2005
         (288 letters)



>mm_chr14_102136762_102137449
          Length = 688

 Score =  520 bits (269), Expect = e-152
 Identities = 284/289 (98%), Gaps = 2/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaattcttgtggaggtagggggcagattctgaaataggaaccagggcagcaatgtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaattcttgtggaggtagggggcagattctgaaataggaaccagggcagcaatgtta 260

                                                                       
Query: 61  agagaataacccgactccaggaagcctaagcagcaaggtcaagttgtgaggaatggaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaataacccgactccaggaagcctaagcagcaaggtcaagttgtgaggaatggaagg 320

                                                                       
Query: 121 gtcccagcacatttggattcttctatgggtggatgaaaatctagaagtgggtgtgctcat 180
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gtcccagcacattcggattcttctatgggtggacgaaaatctagaagtgggtgtgctcat 380

                                                                       
Query: 181 aaagtaatacaaaggtcaacctatatcttcagtgtgacggtatcacctagagagtggacc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 aaagtaatacaaaggtcaacctatatcttcagtgtgatggtatcacctagagagtggacc 440

                                                            
Query: 241 ccttgggtcaaaaggtgatgagcaccagc-tggaagtgaatctggtacc 288
           ||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 441 ccttgggtcaaaaggtgatgagcaccagcctgga-gtgaatctggtacc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)