BAC Information

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BAC

Clone NameMSMg01-194M19
Chromosome14 (Build37)
Map Location 36,240,242 - 36,240,720
singlet/doubletsinglet
Overlap geneGrid1
Upstream geneBmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341
Downstream gene4930596D02Rik, LOC100040277, LOC665933, 4930474N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194M19.T7 (MSMg01no194_m19.b1)MSMg01-194M19.TJ (MSMg01no194_m19.g1)
ACCAG383583AG383584
length747748
length of high quality
(start - end)
659 (46 - 704)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no194_m19.b1 PHD_FILE: MSMg01no194_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:47 2005CHROMAT_FILE: MSMg01no194_m19.g1 PHD_FILE: MSMg01no194_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTATACACTAACATCCATTTATCTGTATTTATAAAATGGGTACAGATA
ATTGCATCTAAATGCCTTGCATGCTTGTGTAAACGTTTTGAAAACGATAA
AGCCTTGTGCTGGCAAATGGGACCAACTTATCATCTGACATATCTATGAC
CATTTGGCAAGGATGATGAGGGGGAAGGATTCTAAAGTAACAGTACCACC
CACGGCAGGGCACTTGAGTGATGGTATTTAACTCCTGGGAGCTACATGGC
ATCAAGTAGATAGAAATTTCCTATTGTGATTGTTGACTATCACCTTGACA
GGATCTAGAAAAATTCTACAAGAGAGGAGCCTGTGGGCAATTCTGTAAGG
GGTTATGTGCATTTAGGTTGGCCTCTGGGTATGTCCATGAGGGATTATCC
AGATCAGGTGAATTAATGTGGGAAGCGCAACTTTAACCTTGGTCAGCACC
ACTTCATGGGCTTGGGTCCTGAACTGAATAAAAAGAAGAAATTGCATTGA
GCAGAGGCATTTGATTCTTTGCCTTCTTGGTGTGGATGTAATGTGAGCAG
CTGTCCCAAAGTTTCCTACCAAGATGATCTATCAACCTTGAATAGTGAGA
CTAAATAGACTGTATCTCCATTAAGGTGCTCTTGTCAGAGTATTGTCACA
GCAACAAAACAAATGACTAACACATCCATAAGTCTAGAAAAAATGAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAATTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_m19.b1 MSMg01no194_m19.b1 CHROMAT_FILE:
MSMg01no194_m19.b1 PHD_FILE: MSMg01no194_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:47 2005
         (659 letters)



>mm_chr14_36240242_36241300
          Length = 1059

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattatacactaacatccatttatctgtatttataaaatgggtacagataattgcatcta 65
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aattatacactaacatacatttatctgtatttataaaatgggtacagataattgcatcta 420

                                                                       
Query: 66  aatgccttgcatgcttgtgtaaacgttttgaaaacgataaagccttgtgctggcaaatgg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatgccttgcatgcttgtgtaaacgttttgaaaacgataaagccttgtgctggcaaatgg 360

                                                                       
Query: 126 gaccaacttatcatctgacatatctatgaccatttggcaaggatgatgagggggaaggat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gaccaacttatcatctgacatatctatgaccatttggcaaggatgatgagggggaaggat 300

                                                                       
Query: 186 tctaaagtaacagtaccacccacggcagggcacttgagtgatggtatttaactcctggga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tctaaagtaacagtaccacccacggcagggcacttgagtgatggtatttaactcctggga 240

                                                                       
Query: 246 gctacatggcatcaagtagatagaaatttcctattgtgattgttgactatcaccttgaca 305
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gctacgtggcatcaagtagatagaaatttcctattgtgattgttgactatcaccttgaca 180

                                                                       
Query: 306 ggatctagaaaaattctacaagagaggagcctgtgggcaattctgtaaggggttatgtgc 365
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 179 ggatctagaaaaattctacaagagaggagcctgtgggcgattctgtaaggggttatgtgc 120

                                                                       
Query: 366 atttaggttggcctctgggtatgtccatgagggattatccagatcaggtgaattaatgtg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 atttaggttggcctctgggtatgtccatgagggattatccagatcaggtgaattaatgtg 60

                                                                      
Query: 426 ggaagcgcaactttaaccttggtcagcaccacttcatgggcttgggtcctgaactgaat 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  ggaagcgcaactttaaccttggtcagcaccacttcatgggcttgggtcctgaactgaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)